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Download codon information

Codon frequency ratio: percentage of codon among all the codons in a specific gene/transcript
CAI: Codon Adaptation Index; CBI: Codon Bias Index
tAI: tRNA adaptation index

Species	Genome version	Source
Homo sapien	hg19	GENCODE
Homo sapien	hg38	GENCODE
Mus musculus	mm10	GENCODE
Mus musculus	mm39	GENCODE
Rattus norvegicus	rn6	Ensembl
Danio rerio	GRCz11	Ensembl
Bos taurus	ARS-UCD1.2	Ensembl
Canis lupus familiaris	ROS Cfam 1.0	Ensembl
Gallus gallus	GRCg7b	Ensembl
Gorilla gorilla	gorGor4	Ensembl
Macaca mulatta	Mmul_10	Ensembl
Pan troglodytes	Pan_tro_3.0	Ensembl
Sus scrofa	Sscrofa11.1	Ensembl
Xenopus tropicalis	UCB Xtro 10.0	Ensembl
Drosophila melanogaster	Dm6	Ensembl
Caenorhabditis elegans	WBcel235	Ensembl
Saccharomyces cerevisiae	R64	Ensembl
Anopheles gambiae	AgamP4	Ensembl
Arabidopsis thaliana	TAIR10	Ensembl
Oryza sativa	IRGSP-1.0	Ensembl
Zea mays	B73_RefGen_v4	Ensembl
Zea mays	B73 NAM 5.0	Ensembl
Glycine max	Wm82.a2/gma_v2	Ensembl
Solanum lycopersicum	SL3.0	Ensembl
Vitis vinifera	PN40024.v4	Ensembl
Triticum aestivum	IWGSC RefSeq 1.0	Ensembl
Sorghum bicolor	NCBIv3	Ensembl
Solanum tuberosum	SolTub 3.0	Ensembl
Populus trichocarpa	Pop_tri_v3	Ensembl
Physcomitrium patens	Phypa_V3	Ensembl
Medicago truncatula	MedtrA17 4.0	Ensembl
Gossypium raimondii	Graimondii2_0_v6	Ensembl
Cucumis sativus	ASM407v2	Ensembl
Chlamydomonas reinhardtii	v5.5	Ensembl
Brassica rapa	Brapa 1.0	Ensembl
Brachypodium distachyon	bdi.v3.0	Ensembl
Malus domestica golden	ASM211411v1	Ensembl
Escherichia coli	K-12 MG1655	Ensembl
Bacillus subtilis	Strain 168	Ensembl
Pyrococcus furiosus	DSM 3638	Ensembl
Halobacterium salinarum	NRC1	Ensembl