RiboToolkit | Analysis

Codon statistics

Upload your objective genes and codons to conduct codon constitution and enrichment analyses.

Species	Genome version	Source	Gene ID	Gene name
Homo sapien	hg19	GENCODE	.txt	.txt
Homo sapien	hg38	GENCODE	.txt	.txt
Mus musculus	mm10	GENCODE	.txt	.txt
Rattus norvegicus	rn6	Ensembl	.txt	.txt
Danio rerio	GRCz11	Ensembl	.txt	.txt
Drosophila melanogaster	Dm6	Ensembl	.txt	.txt
Caenorhabditis elegans	WBcel235	Ensembl	.txt	.txt
Saccharomyces cerevisiae	R64	Ensembl	.txt	.txt
Arabidopsis thaliana	TAIR10	Ensembl	.txt	.txt
Oryza sativa	IRGSP-1.0	Ensembl	.txt	.txt
Zea mays	B73_RefGen_v4	Ensembl	.txt	.txt
Glycine max	Wm82.a2	Ensembl	.txt	.txt
Solanum lycopersicum	SL3.0	Ensembl	.txt	.txt
Escherichia coli	K-12 MG1655	Ensembl	.txt	.txt
Bacillus subtilis	Strain 168	Ensembl	.txt	.txt
Pyrococcus furiosus	DSM 3638	Ensembl	.txt	.txt
Halobacterium salinarum	NRC1	Ensembl	.txt	.txt

Species	Genome version	Source	Codon frequency ratio file
Homo sapien	hg19	GENCODE	.txt
Homo sapien	hg38	GENCODE	.txt
Mus musculus	mm10	GENCODE	.txt
Rattus norvegicus	rn6	Ensembl	.txt
Danio rerio	GRCz11	Ensembl	.txt
Drosophila melanogaster	Dm6	Ensembl	.txt
Caenorhabditis elegans	WBcel235	Ensembl	.txt
Saccharomyces cerevisiae	R64	Ensembl	.txt
Arabidopsis thaliana	TAIR10	Ensembl	.txt
Oryza sativa	IRGSP-1.0	Ensembl	.txt
Zea mays	B73_RefGen_v4	Ensembl	.txt
Glycine max	Wm82.a2	Ensembl	.txt
Solanum lycopersicum	SL3.0	Ensembl	.txt
Escherichia coli	K-12 MG1655	Ensembl	.txt
Bacillus subtilis	Strain 168	Ensembl	.txt
Pyrococcus furiosus	DSM 3638	Ensembl	.txt
Halobacterium salinarum	NRC1	Ensembl	.txt

The fields marked by "*" are required!

Species *

Please select a species.

Genes *

Please input gene IDs or names

Codons

Select codons Input codons All codon

Please input codons group
Example (m7G modified tRNA decoding codons)

Background

Other-genes Random-select User-define

Please input background genes

P-value *

P-value cutoff for codon enrichments

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