sRNAtools | Targets

Targets analysis

Input transcript and sncRNA sequences to analyze their target genes:

sncRNA and transcript sequence should be in FASTA format
The maximum number of both sncRNA sequences and transcript sequences for each task is 1000
Four popular used tools are provided (Tapirhybrid and Targetfinder for plant, Miranda and RNAhybrid for other species)

The fields marked by "*" are required!

Transcripts *

Please input or upload sequences bellow in fasta format.
Example Clear

Select file Change Remove

sncRNAs *

Please input or upload sequences bellow in fasta format.
Example1 Example2 Clear

Select file Change Remove

When the job is complete, you can get an notification (optional field)

Tools

miRanda RNAhybrid Targetfinder Tapirhybrid

MFE *

Minimal free energy cutoff

Score *

miRanda score cutoff