RPF length comparison       

   Reproducibility analysis based on RPF and gene expression   

   Scatter correlation plots of codon occupancy (A-site) between two groups and reproducibility among replicates in each group    

   Codon occupancy changes of E, P, A, +1, +2 and +3 sites between two groups  

   Cumulative changes of codon occupancy for specific amino acid  

   Cumulative changes of codon occupancy for specific codon  

   Codon occupancy changes of E, P, A, +1, +2 and +3 sites between two groups for translational up/down-regulated genes.  

   Gene expression and translation efficiency (TE) changes between two groups  

   Metagene coverage for whole CDS and CDS start/end regions  

   Metagene coverage for translation up-regulated and down-regulated genes  

   Active ORF comparison statistics       

  The signal and membrane proteins statistics       

   Differential pause site statistics       

   Differentially translated gene list  

   Gene Ontology functional enrichment for differentially translated genes  

   Functional pathway enrichment for differentially translated genes   

   Gene set enrichment analysis (GSEA) for differentially translated genes