RiboToolkit | ORFscan

ORF case (Beta version)

Upload your job ID of single case to perform ORF analyses:

Input should be RiboToolkit job ID of single case.
You can also upload the gene raw reads counts of according RNA-seq sample to perform translation analysis among different ORF-containing genes (optional).

The fields marked by "*" are required!

Job ID(s) *

Provide completed single case job ID to perform ORF analyses (Example).

Sample names *

Separate multiple sample names by comma ",", which should be in the same order of input job IDs.

Tool

Ribocode RibORF RiboTish ORFscore Price

ORF score cutoff *

ORF score threshold

Prediction pvalue cutoff *

Prediction pvalue cutoff

P-value cutoff *

P-value threshold

Use alternative start codons

No (use only ATG) Yes

Alternative start codons

ORF length cutoff

Number of amino acids (aa)

Expression matrix
(optional)

Mouse example (.txt, .txt.zip, .txt.gz)

Get an notification when the job is done (optional)