RNAmod | Analysis

Group case

Upload job IDs of single case of replicates to perform group analysis:

The job with the job ID should be single case study and is completed
At least two samples/replicates for the group

The fields marked by "*" are required!

Group 1

Replicate 1 *

Example (hg38)

Replicate 2 *

Example (hg38)

Replicates processing *

Intersect or union the replicates

Flank size (bp) *

Flank size for transcription start/end sites (genomic level) Flank size for translation start/end sites and splice sites (transcript level)

Number of bins *

Divide gene feature into equal bins (features with length small than this value are excluded)

Scale RNA feature length *

Scale the length of CDS and UTR in mRNA metagene plot

Please input gene symbols or Ensembl Gene IDs Example (mm10)

Background genes list (Leave it blank if all other genes are used as background)

Motif parameters *

Motif width (separated by comma for multiple widths, such as 6,7,8 and 5,6)

Use subset of modification sites (score information are required in BED6)

When the job is completed, you can get an notification (optional field)