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PsiVar
PsiVar module
PsiVar to detect potential deleterious effects of genetic variants on Ψ modifications.
1. Upload your variant sites.
2. Input files could be in
VCF format
.
3. To reduce the file size, we highly recommend that the file is further compressed in .zip or .gz format.
The fields marked by "*" are required!
Select the reference genome and upload variant file
Reference genome version
*
Homo sapiens
Mus musculus
Rattus norvegicus
Arabidopsis thaliana
Bacillus Subtilis
Bos taurus
Bulinus Truncatus
Caenorhabditis elegans
Cucumis melo
Chlamydomonas reinhardtii
Cucumis sativus
Drosophila melanogaster
Danio rerio
Escherichia coli (K-12)
Enterobacteria phage T4
Enterobacteria phage T5
Gallus gallus
Glycine max
Geobacillus stearothermophilus
Halobacterium salinarum
Haloferax volcanii
Mesocricetus auratus
Mycoplasma capricolum
Mycoplasma ycoides
Neurospora crassa
Nakaseomyces nivariensis
Nicotiana tabacum
Ovis aries
Oryctolagus cuniculus
Pichia jadinii
Penaeus monodon
Physcomitrium patens
Populus trichocarpa
Phaseolus vulgaris
Saccharomyces cerevisiae
Spiroplasma citri
Synechococcus elongatus
Spinacia oleracea
Schizosaccharomyces pombe
Sus scrofa
Solanum tuberosum
Salmonella typhimurium
Thermoplasma acidophilum
Tetrahymena thermophila
Toxoplasma gondii ME49
Thermus thermophilus
Xenopus laevis
Zea mays
Please choose a species for the analysis
Variation input
*
Please upload
VCF file (maximum file size: 50 MB) Example:
Arabidopsis thaliana
Zea mays
Select file
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