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PsiRMVar
PsiRMVar module
PsiRMVar to detect potential deleterious variants effects on pseudouridine modification:
1. Upload your variants sites.
2. Input files could be in
VCF format
.
3. To reduce the file size, we highly recommend that the file is further compressed in .zip or .gz format.
The fields marked by "*" are required!
Select the reference genome and upload variants file
Reference genome version
*
Homo sapiens
Mus musculus
Rattus norvegicus
Arabidopsis thaliana
Bacillus Subtilis
Bos taurus
Bulinus Truncatus
Caenorhabditis elegans
Cucumis melo
Chlamydomonas reinhardtii
Cucumis sativus
Drosophila melanogaster
Danio rerio
Escherichia coli (K-12)
Enterobacteria phage T4
Enterobacteria phage T5
Gallus gallus
Glycine max
Geobacillus stearothermophilus
Halobacterium salinarum
Haloferax volcanii
Mesocricetus auratus
Mycoplasma capricolum
Mycoplasma ycoides
Neurospora crassa
Nakaseomyces nivariensis
Nicotiana tabacum
Ovis aries
Oryctolagus cuniculus
Pichia jadinii
Penaeus monodon
Physcomitrium patens
Populus trichocarpa
Phaseolus vulgaris
Saccharomyces cerevisiae
Spiroplasma citri
Synechococcus elongatus
Spinacia oleracea
Schizosaccharomyces pombe
Sus scrofa
Solanum tuberosum
Salmonella typhimurium
Thermoplasma acidophilum
Tetrahymena thermophila
Toxoplasma gondii ME49
Thermus thermophilus
Xenopus laevis
Zea mays
Nothing selected
Homo sapiens
(hg38)
Mus musculus
(mm10)
Rattus norvegicus
(rn6)
Arabidopsis thaliana
(TAIR10)
Bacillus Subtilis
(ASM69118v1)
Bos taurus
(bosTau9)
Bulinus Truncatus
(Btru.v1)
Caenorhabditis elegans
(ce11)
Cucumis melo
(ASM31304v1)
Chlamydomonas reinhardtii
(CHLRE3)
Cucumis sativus
(ASM407v2)
Drosophila melanogaster
(BDGP6)
Danio rerio
(danRer11)
Escherichia coli (K-12)
(ASM584v2)
Enterobacteria phage T4
(ViralProj14044)
Enterobacteria phage T5
(ASM292140v1)
Gallus gallus
(GRCg6a)
Glycine max
(glyMax2)
Geobacillus stearothermophilus
(ASM74998v1)
Halobacterium salinarum
(ASM680v1)
Haloferax volcanii
(ASM2568v1)
Mesocricetus auratus
(MesAur1)
Mycoplasma capricolum
(ASM83033v1)
Mycoplasma ycoides
(ASM25307v1)
Neurospora crassa
(NC12)
Nakaseomyces nivariensis
(JHU_Cniv_v1)
Nicotiana tabacum
(Ntab_TN90)
Ovis aries
(Oarv3)
Oryctolagus cuniculus
(OryCun2)
Pichia jadinii
(Cybja1)
Penaeus monodon
(NSTDA_Pmon_1)
Physcomitrium patens
(Phypa)
Populus trichocarpa
(Pop_tri_v3)
Phaseolus vulgaris
(PhaVulg1)
Saccharomyces cerevisiae
(sacCer3)
Spiroplasma citri
(ASM188685v1)
Synechococcus elongatus
(ASM1006v1)
Spinacia oleracea
(ASM200726v1)
Schizosaccharomyces pombe
(ASM294v2)
Sus scrofa
(Sscrofa11.1)
Solanum tuberosum
(SolTub3)
Salmonella typhimurium
(ASM553737v1)
Thermoplasma acidophilum
(ASM19591v1)
Tetrahymena thermophila
(JCVI_TTA1_2)
Toxoplasma gondii ME49
(TGA4)
Thermus thermophilus
(ASM812v1)
Xenopus laevis
(Xenopus_laevisv2)
Zea mays
(Zm-B73-REFERENCE-NAM-5)
Please choose a species for the analysis
Variation input
*
Please upload
VCF file (Files max size is 50MB!)
Example:
Arabidopsis thaliana
Zea mays
Select file
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