Chromosome Band
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Chromosome Band'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/cytoBand
UCSC track
STS Markers
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/stsMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/stsMap
UCSC track
FISH Clones
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'FISH Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fishClones", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/fishClones_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/fishClones
UCSC track
Recomb Rate
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Recomb Rate'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("recombRate", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/recombRate_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/recombRate
UCSC track
ENCODE Pilot
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'ENCODE Pilot'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRegions", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/encodeRegions_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/encodeRegions
UCSC track
Map Contigs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ctgPos
UCSC track
Assembly
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/gold
UCSC track
GRC Map Contigs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GRC Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ctgPos2
UCSC track
Publications
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Publications'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pubs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/pubs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/pubs
UCSC track
BAC End Pairs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/bacEndPairs
UCSC track
Fosmid End Pairs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Fosmid End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fosEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/fosEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/fosEndPairs
UCSC track
Hg18 Diff
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Hg18 Diff'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hg19ContigDiff", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/hg19ContigDiff_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/hg19ContigDiff
UCSC track
GRC Incident
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GRC Incident'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("grcIncidentDb", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/grcIncidentDb_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/grcIncidentDb
UCSC track
Hi Seq Depth
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Hi Seq Depth'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hiSeqDepth", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/hiSeqDepth_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/hiSeqDepth
UCSC track
Wiki Track
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Wiki Track'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wikiTrack", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wikiTrack_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wikiTrack
UCSC track
GAD View
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GAD View'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gad", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/gad_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/gad
UCSC track
COSMIC
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'COSMIC'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cosmic", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/cosmic_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/cosmic
UCSC track
GWAS Catalog
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GWAS Catalog'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gwasCatalog", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/gwasCatalog_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/gwasCatalog
UCSC track
ISCA
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'ISCA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("iscaComposite", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/iscaComposite_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/iscaComposite
UCSC track
Coriell CNVs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Coriell CNVs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("coriellDelDup", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/coriellDelDup_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/coriellDelDup
UCSC track
RGD Human QTL
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'RGD Human QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/rgdQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/rgdQtl
UCSC track
RGD Rat QTL
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'RGD Rat QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdRatQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/rgdRatQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/rgdRatQtl
UCSC track
MGI Mouse QTL
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'MGI Mouse QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxQtlMapped", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/jaxQtlMapped_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/jaxQtlMapped
UCSC track
GeneReviews
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GeneReviews'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneReviews", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/geneReviews_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/geneReviews
UCSC track
UCSC Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'UCSC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/knownGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/knownGene
UCSC track
Old UCSC Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Old UCSC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGeneOld5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/knownGeneOld5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/knownGeneOld5
UCSC track
Alt Events
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Alt Events'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownAlt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/knownAlt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/knownAlt
UCSC track
CCDS
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'CCDS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ccdsGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ccdsGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ccdsGene
UCSC track
RefSeq Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/refGene
UCSC track
Other RefSeq
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/mgcFullMrna
UCSC track
ORFeome Clones
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'ORFeome Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("orfeomeMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/orfeomeMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/orfeomeMrna
UCSC track
Vega Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Vega Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vegaGeneComposite", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/vegaGeneComposite_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/vegaGeneComposite
UCSC track
Pfam in UCSC Gene
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Pfam in UCSC Gene'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ucscGenePfam", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ucscGenePfam_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ucscGenePfam
UCSC track
Ensembl Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ensGene
UCSC track
AceView Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'AceView Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acembly", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/acembly_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/acembly
UCSC track
SIB Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SIB Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sibGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/sibGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/sibGene
UCSC track
N-SCAN
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/nscanGene
UCSC track
SGP Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/sgpGene
UCSC track
Geneid Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/geneid
UCSC track
Genscan Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/genscan
UCSC track
Exoniphy
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Exoniphy'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exoniphy", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/exoniphy_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/exoniphy
UCSC track
Yale Pseudo60
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Yale Pseudo60'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pseudoYale60", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/pseudoYale60_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/pseudoYale60
UCSC track
tRNA Genes
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/tRNAs
UCSC track
H-Inv 7.0
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'H-Inv 7.0'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hinv70Composite", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/hinv70Composite_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/hinv70Composite
UCSC track
EvoFold
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'EvoFold'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evofold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/evofold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/evofold
UCSC track
sno/miRNA
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'sno/miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgRna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgRna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgRna
UCSC track
IKMC Genes Mapped
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'IKMC Genes Mapped'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hgIkmc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/hgIkmc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/hgIkmc
UCSC track
Human mRNAs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Human mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/mrna
UCSC track
Spliced ESTs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/intronEst
UCSC track
Human ESTs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Human ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/est
UCSC track
Other mRNAs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/xenoMrna
UCSC track
H-Inv
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'H-Inv'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("HInvGeneMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/HInvGeneMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/HInvGeneMrna
UCSC track
UniGene
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'UniGene'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("uniGene_3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/uniGene_3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/uniGene_3
UCSC track
Gene Bounds
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Gene Bounds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rnaCluster", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/rnaCluster_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/rnaCluster
UCSC track
SIB Alt-Splicing
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SIB Alt-Splicing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sibTxGraph", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/sibTxGraph_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/sibTxGraph
UCSC track
Poly(A)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Poly(A)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("polyA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/polyA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/polyA
UCSC track
CGAP SAGE
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'CGAP SAGE'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cgapSage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/cgapSage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/cgapSage
UCSC track
Human RNA Editing
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Human RNA Editing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("darned", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/darned_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/darned
UCSC track
Affy Exon Array
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Affy Exon Array'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyExonArray", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/affyExonArray_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/affyExonArray
UCSC track
Affy GNF1H
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Affy GNF1H'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1h", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/affyGnf1h_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/affyGnf1h
UCSC track
Affy RNA Loc
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Affy RNA Loc'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeAffyRnaChip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgEncodeAffyRnaChip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgEncodeAffyRnaChip
UCSC track
Affy U133
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Affy U133'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/affyU133_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/affyU133
UCSC track
Affy U133Plus2
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Affy U133Plus2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133Plus2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/affyU133Plus2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/affyU133Plus2
UCSC track
Affy U95
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Affy U95'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU95", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/affyU95_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/affyU95
UCSC track
Allen Brain
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Allen Brain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allenBrainAli", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/allenBrainAli_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/allenBrainAli
UCSC track
Burge RNA-seq
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Burge RNA-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("burgeRnaSeqGemMapperAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/burgeRnaSeqGemMapperAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/burgeRnaSeqGemMapperAlign
UCSC track
CSHL Small RNA-seq
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'CSHL Small RNA-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeCshlShortRnaSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgEncodeCshlShortRnaSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgEncodeCshlShortRnaSeq
UCSC track
GIS RNA PET
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GIS RNA PET'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeGisRnaPet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgEncodeGisRnaPet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgEncodeGisRnaPet
UCSC track
GNF Atlas 2
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GNF Atlas 2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gnfAtlas2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/gnfAtlas2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/gnfAtlas2
UCSC track
Illumina WG-6
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Illumina WG-6'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("illuminaProbes", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/illuminaProbes_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/illuminaProbes
UCSC track
qPCR Primers
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'qPCR Primers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("qPcrPrimers", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/qPcrPrimers_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/qPcrPrimers
UCSC track
RIKEN CAGE Loc
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'RIKEN CAGE Loc'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeRikenCage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgEncodeRikenCage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgEncodeRikenCage
UCSC track
CD34 DnaseI
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'CD34 DnaseI'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("eioJcviNAS", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/eioJcviNAS_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/eioJcviNAS
UCSC track
CpG Islands
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/cpgIslandExt
UCSC track
ORegAnno
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'ORegAnno'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("oreganno", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/oreganno_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/oreganno
UCSC track
SUNY SwitchGear
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SUNY SwitchGear'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeSunySwitchgear", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgEncodeSunySwitchgear_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgEncodeSunySwitchgear
UCSC track
SwitchGear TSS
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SwitchGear TSS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("switchDbTss", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/switchDbTss_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/switchDbTss
UCSC track
TFBS Conserved
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'TFBS Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tfbsConsSites", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/tfbsConsSites_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/tfbsConsSites
UCSC track
TS miRNA sites
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'TS miRNA sites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("targetScanS", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/targetScanS_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/targetScanS
UCSC track
UMMS Brain Hist
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'UMMS Brain Hist'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("uMassBrainHistone", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/uMassBrainHistone_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/uMassBrainHistone
UCSC track
Vista Enhancers
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Vista Enhancers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vistaEnhancers", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/vistaEnhancers_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/vistaEnhancers
UCSC track
Cons Indels MmCf
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Cons Indels MmCf'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("consIndelsHgMmCanFam", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/consIndelsHgMmCanFam_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/consIndelsHgMmCanFam
UCSC track
GERP
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'GERP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allHg19RS_BW", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/allHg19RS_BW_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/allHg19RS_BW
UCSC track
Evo Cpg
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Evo Cpg'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evoCpg", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/evoCpg_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/evoCpg
UCSC track
Primate Chain/Net
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Primate Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("primateChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/primateChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/primateChainNet
UCSC track
Placental Chain/Net
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Placental Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("placentalChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/placentalChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/placentalChainNet
UCSC track
Vertebrate Chain/Net
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Vertebrate Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vertebrateChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/vertebrateChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/vertebrateChainNet
UCSC track
H-C Coding Diffs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'H-C Coding Diffs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntHumChimpCodingDiff", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ntHumChimpCodingDiff_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ntHumChimpCodingDiff
UCSC track
5% Lowest S
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track '5% Lowest S'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSssTop5p", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ntSssTop5p_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ntSssTop5p
UCSC track
S SNPs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'S SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSssSnps", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ntSssSnps_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ntSssSnps
UCSC track
Neandertal Seq
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Neandertal Seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSeqReads", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/ntSeqReads_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/ntSeqReads
UCSC track
Modern Derived
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Modern Derived'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("dhcHumDerDenAnc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/dhcHumDerDenAnc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/dhcHumDerDenAnc
UCSC track
Common SNPs(137)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Common SNPs(137)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp137Common", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp137Common_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp137Common
UCSC track
Flagged SNPs(137)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Flagged SNPs(137)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp137Flagged", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp137Flagged_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp137Flagged
UCSC track
Mult. SNPs(137)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Mult. SNPs(137)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp137Mult", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp137Mult_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp137Mult
UCSC track
Common SNPs(135)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Common SNPs(135)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp135Common", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp135Common_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp135Common
UCSC track
Flagged SNPs(135)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Flagged SNPs(135)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp135Flagged", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp135Flagged_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp135Flagged
UCSC track
Mult. SNPs(135)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Mult. SNPs(135)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp135Mult", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp135Mult_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp135Mult
UCSC track
Common SNPs(132)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Common SNPs(132)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp132Common", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp132Common_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp132Common
UCSC track
Flagged SNPs(132)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Flagged SNPs(132)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp132Flagged", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp132Flagged_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp132Flagged
UCSC track
Mult. SNPs(132)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Mult. SNPs(132)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp132Mult", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp132Mult_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp132Mult
UCSC track
SNPs (131)
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SNPs (131)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp131", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/snp131_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/snp131
UCSC track
1000G Ph1 Accsbl
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track '1000G Ph1 Accsbl'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tgpPhase1Accessibility", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/tgpPhase1Accessibility_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/tgpPhase1Accessibility
UCSC track
HAIB Genotype
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'HAIB Genotype'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeHaibGenotype", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/wgEncodeHaibGenotype_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/wgEncodeHaibGenotype
UCSC track
SNP/CNV Arrays
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'SNP/CNV Arrays'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genotypeArrays", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/genotypeArrays_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/genotypeArrays
UCSC track
HGDP Allele Freq
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'HGDP Allele Freq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hgdpGeo", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/hgdpGeo_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/hgdpGeo
UCSC track
HapMap SNPs
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'HapMap SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hapmapSnps", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/hapmapSnps_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/hapmapSnps
UCSC track
DGV Struct Var
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'DGV Struct Var'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("dgv", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/dgv_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/dgv
UCSC track
Segmental Dups
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/genomicSuperDups
UCSC track
RepeatMasker
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/microsat
UCSC track
Self Chain
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Self Chain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/chainSelf
UCSC track
Genome Variants
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Genome Variants'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pgSnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/pgSnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/pgSnp
UCSC track
NumtS Sequence
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'NumtS Sequence'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("numtSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/numtSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/numtSeq
UCSC track
Chromosome Band
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Chromosome Band'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/cytoBand
UCSC track
STS Markers
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/stsMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/stsMap
UCSC track
FISH Clones
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'FISH Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fishClones", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/fishClones_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/fishClones
UCSC track
Recomb Rate
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Recomb Rate'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("recombRate", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/recombRate_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/recombRate
UCSC track
Map Contigs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ctgPos
UCSC track
Assembly
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/gold
UCSC track
Gap
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/gap
UCSC track
Coverage
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Coverage'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("clonePos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/clonePos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/clonePos
UCSC track
BAC End Pairs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/bacEndPairs
UCSC track
Fosmid End Pairs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Fosmid End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fosEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/fosEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/fosEndPairs
UCSC track
Hg19 Diff
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Hg19 Diff'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hg18ContigDiff", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/hg18ContigDiff_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/hg18ContigDiff
UCSC track
Hi Seq Depth
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Hi Seq Depth'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hiSeqDepth", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/hiSeqDepth_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/hiSeqDepth
UCSC track
Wiki Track
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Wiki Track'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wikiTrack", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wikiTrack_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wikiTrack
UCSC track
GAD View
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GAD View'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gad", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/gad_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/gad
UCSC track
R-DMR
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'R-DMR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rdmr", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rdmr_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rdmr
UCSC track
GWAS Catalog
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GWAS Catalog'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gwasCatalog", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/gwasCatalog_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/gwasCatalog
UCSC track
ISCA
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'ISCA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("iscaComposite", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/iscaComposite_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/iscaComposite
UCSC track
RGD Human QTL
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RGD Human QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rgdQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rgdQtl
UCSC track
RGD Rat QTL
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RGD Rat QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdRatQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rgdRatQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rgdRatQtl
UCSC track
MGI Mouse QTL
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'MGI Mouse QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxQtlMapped", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/jaxQtlMapped_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/jaxQtlMapped
UCSC track
GeneReviews
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GeneReviews'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneReviews", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/geneReviews_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/geneReviews
UCSC track
UCSC Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'UCSC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/knownGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/knownGene
UCSC track
Old UCSC Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Old UCSC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGeneOld3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/knownGeneOld3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/knownGeneOld3
UCSC track
Alt Events
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Alt Events'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownAlt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/knownAlt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/knownAlt
UCSC track
Gencode Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Gencode Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeSangerGencode", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeSangerGencode_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeSangerGencode
UCSC track
CCDS
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'CCDS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ccdsGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ccdsGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ccdsGene
UCSC track
RefSeq Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/refGene
UCSC track
Other RefSeq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/mgcFullMrna
UCSC track
ORFeome Clones
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'ORFeome Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("orfeomeMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/orfeomeMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/orfeomeMrna
UCSC track
Vega Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Vega Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vegaGeneComposite", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/vegaGeneComposite_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/vegaGeneComposite
UCSC track
Ensembl Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ensGene
UCSC track
AceView Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'AceView Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acembly", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/acembly_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/acembly
UCSC track
SIB Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SIB Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sibGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/sibGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/sibGene
UCSC track
N-SCAN
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/nscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/nscan
UCSC track
CONTRAST
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'CONTRAST'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("contrastGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/contrastGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/contrastGene
UCSC track
SGP Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/sgpGene
UCSC track
Geneid Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/geneid
UCSC track
Genscan Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/genscan
UCSC track
Exoniphy
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Exoniphy'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exoniphy", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/exoniphy_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/exoniphy
UCSC track
Augustus
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Augustus'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("augustus", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/augustus_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/augustus
UCSC track
RNA Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rnaGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rnaGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rnaGene
UCSC track
tRNA Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/tRNAs
UCSC track
ACEScan
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'ACEScan'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acescan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/acescan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/acescan
UCSC track
EvoFold
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'EvoFold'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evofold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/evofold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/evofold
UCSC track
EvoFold v.2
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'EvoFold v.2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evofoldV2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/evofoldV2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/evofoldV2
UCSC track
sno/miRNA
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'sno/miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgRna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgRna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgRna
UCSC track
Pos Sel Genes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Pos Sel Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mammalPsg", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/mammalPsg_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/mammalPsg
UCSC track
Human mRNAs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Human mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/mrna
UCSC track
Spliced ESTs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/intronEst
UCSC track
Human ESTs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Human ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/est
UCSC track
Other mRNAs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/xenoMrna
UCSC track
H-Inv
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'H-Inv'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("HInvGeneMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/HInvGeneMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/HInvGeneMrna
UCSC track
UniGene
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'UniGene'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("uniGene_3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/uniGene_3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/uniGene_3
UCSC track
Gene Bounds
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Gene Bounds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rnaCluster", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rnaCluster_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rnaCluster
UCSC track
SIB Alt-Splicing
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SIB Alt-Splicing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sibTxGraph", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/sibTxGraph_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/sibTxGraph
UCSC track
Poly(A)
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Poly(A)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("polyA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/polyA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/polyA
UCSC track
CGAP SAGE
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'CGAP SAGE'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cgapSage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/cgapSage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/cgapSage
UCSC track
Human RNA Editing
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Human RNA Editing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("darned", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/darned_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/darned
UCSC track
Affy GNF1H
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Affy GNF1H'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1h", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/affyGnf1h_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/affyGnf1h
UCSC track
Affy U133
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Affy U133'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/affyU133_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/affyU133
UCSC track
Affy U133Plus2
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Affy U133Plus2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133Plus2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/affyU133Plus2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/affyU133Plus2
UCSC track
Affy U95
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Affy U95'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU95", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/affyU95_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/affyU95
UCSC track
Allen Brain
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Allen Brain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allenBrainAli", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/allenBrainAli_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/allenBrainAli
UCSC track
Bertone Yale TAR
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Bertone Yale TAR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("yaleBertoneTars", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/yaleBertoneTars_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/yaleBertoneTars
UCSC track
CSHL Sm RNA-seq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'CSHL Sm RNA-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeCshlShortRnaSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeCshlShortRnaSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeCshlShortRnaSeq
UCSC track
Duke Affy Exon
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Duke Affy Exon'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeDukeAffyExonArray", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeDukeAffyExonArray_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeDukeAffyExonArray
UCSC track
GIS PET RNA
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GIS PET RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeGisRnaPet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeGisRnaPet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeGisRnaPet
UCSC track
GNF Atlas 2
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GNF Atlas 2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gnfAtlas2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/gnfAtlas2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/gnfAtlas2
UCSC track
GNF Ratio
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GNF Ratio'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyRatio", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/affyRatio_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/affyRatio
UCSC track
Illumina WG-6
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Illumina WG-6'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("illuminaProbes", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/illuminaProbes_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/illuminaProbes
UCSC track
RIKEN CAGE Loc
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RIKEN CAGE Loc'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeRikenCage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeRikenCage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeRikenCage
UCSC track
UW Affy Exon
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'UW Affy Exon'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeUwAffyExonArray", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeUwAffyExonArray_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeUwAffyExonArray
UCSC track
Broad ChromHMM
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Broad ChromHMM'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeBroadHmm", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeBroadHmm_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeBroadHmm
UCSC track
Broad Histone
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Broad Histone'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeBroadChipSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeBroadChipSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeBroadChipSeq
UCSC track
CpG Islands
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/cpgIslandExt
UCSC track
EIO/JCVI NAS
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'EIO/JCVI NAS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("eioJcviNAS", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/eioJcviNAS_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/eioJcviNAS
UCSC track
Eponine TSS
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Eponine TSS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("eponine", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/eponine_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/eponine
UCSC track
FirstEF
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'FirstEF'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("firstEF", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/firstEF_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/firstEF
UCSC track
GIS ChIP-PET
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'GIS ChIP-PET'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeGisChipPetAll", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeGisChipPetAll_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeGisChipPetAll
UCSC track
HAIB Methyl-seq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'HAIB Methyl-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeHudsonalphaMethylSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeHudsonalphaMethylSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeHudsonalphaMethylSeq
UCSC track
HAIB Methyl27
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'HAIB Methyl27'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeHudsonalphaMethyl27", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeHudsonalphaMethyl27_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeHudsonalphaMethyl27
UCSC track
NHGRI Bi-Pro
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'NHGRI Bi-Pro'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeNhgriBip
UCSC track
Open Chromatin
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Open Chromatin'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeChromatinMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeChromatinMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeChromatinMap
UCSC track
ORegAnno
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'ORegAnno'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("oreganno", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/oreganno_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/oreganno
UCSC track
SUNY RBP
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SUNY RBP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeSunyalbanyRnaGeneChip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeSunyalbanyRnaGeneChip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeSunyalbanyRnaGeneChip
UCSC track
SwitchGear TSS
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SwitchGear TSS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("switchDbTss", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/switchDbTss_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/switchDbTss
UCSC track
TFBS Conserved
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'TFBS Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tfbsConsSites", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/tfbsConsSites_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/tfbsConsSites
UCSC track
TS miRNA sites
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'TS miRNA sites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("targetScanS", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/targetScanS_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/targetScanS
UCSC track
UW DNase DGF
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'UW DNase DGF'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeUwDGF", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeUwDGF_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeUwDGF
UCSC track
UW DNaseI HS
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'UW DNaseI HS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeUwDnaseSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeUwDnaseSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeUwDnaseSeq
UCSC track
UW Histone
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'UW Histone'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeUwChIPSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeUwChIPSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeUwChIPSeq
UCSC track
Vista Enhancers
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Vista Enhancers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vistaEnhancers", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/vistaEnhancers_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/vistaEnhancers
UCSC track
Yale TFBS
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Yale TFBS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeYaleChIPseq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeYaleChIPseq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeYaleChIPseq
UCSC track
FOX2 CLIP-seq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'FOX2 CLIP-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fox2ClipSeqComp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/fox2ClipSeqComp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/fox2ClipSeqComp
UCSC track
28-Way Most Cons
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track '28-Way Most Cons'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mostConserved28way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/mostConserved28way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/mostConserved28way
UCSC track
17-Way Most Cons
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track '17-Way Most Cons'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements17way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/phastConsElements17way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/phastConsElements17way
UCSC track
Cons Indels MmCf
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Cons Indels MmCf'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("consIndelsHgMmCanFam", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/consIndelsHgMmCanFam_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/consIndelsHgMmCanFam
UCSC track
Evo Cpg
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Evo Cpg'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evoCpg", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/evoCpg_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/evoCpg
UCSC track
Tetraodon Ecores
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Tetraodon Ecores'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ecoresTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ecoresTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ecoresTetNig1
UCSC track
Chimp Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetPanTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetPanTro2
UCSC track
Orangutan Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetPonAbe2
UCSC track
Rhesus Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetRheMac2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetRheMac2
UCSC track
Marmoset Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetCalJac1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetCalJac1
UCSC track
Guinea pig Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Guinea pig Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCavPor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetCavPor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetCavPor3
UCSC track
Rat Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetMm9
UCSC track
Dog Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetCanFam2
UCSC track
Cat Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Cat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFelCat3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetFelCat3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetFelCat3
UCSC track
Horse Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetEquCab1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetEquCab1
UCSC track
bosTau4 Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'bosTau4 Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBosTau4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetBosTau4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetBosTau4
UCSC track
Tenrec Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Tenrec Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEchTel1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetEchTel1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetEchTel1
UCSC track
Opossum Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetMonDom4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetMonDom4
UCSC track
Platypus Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetOrnAna1
UCSC track
Lizard Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Lizard Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAnoCar1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetAnoCar1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetAnoCar1
UCSC track
Zebra finch Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Zebra finch Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetTaeGut1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetTaeGut1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetTaeGut1
UCSC track
Chicken Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetGalGal3
UCSC track
xenTro2 Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'xenTro2 Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetXenTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetXenTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetXenTro2
UCSC track
Zebrafish Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetDanRer5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetDanRer5
UCSC track
Medaka Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Medaka Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOryLat2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetOryLat2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetOryLat2
UCSC track
Stickleback Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Stickleback Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGasAcu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetGasAcu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetGasAcu1
UCSC track
Fugu Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Fugu Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFr2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetFr2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetFr2
UCSC track
Tetraodon Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Tetraodon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetTetNig1
UCSC track
Lamprey Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Lamprey Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPetMar1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetPetMar1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetPetMar1
UCSC track
Lancelet Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Lancelet Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBraFlo1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetBraFlo1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetBraFlo1
UCSC track
S. purpuratus Chain/Net
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'S. purpuratus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetStrPur2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainNetStrPur2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainNetStrPur2
UCSC track
H-C Coding Diffs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'H-C Coding Diffs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntHumChimpCodingDiff", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ntHumChimpCodingDiff_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ntHumChimpCodingDiff
UCSC track
5% Lowest S
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track '5% Lowest S'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSssTop5p", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ntSssTop5p_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ntSssTop5p
UCSC track
S SNPs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'S SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSssSnps", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ntSssSnps_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ntSssSnps
UCSC track
Neandertal Seq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Neandertal Seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSeqReads", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/ntSeqReads_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/ntSeqReads
UCSC track
SNPs (130)
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SNPs (130)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp130", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/snp130_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/snp130
UCSC track
SNPs (129)
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SNPs (129)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp129", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/snp129_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/snp129
UCSC track
SNPs (128)
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SNPs (128)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp128", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/snp128_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/snp128
UCSC track
SNPs (126)
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'SNPs (126)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp126", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/snp126_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/snp126
UCSC track
Agilent Array
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Agilent Array'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genotypeArrays", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/genotypeArrays_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/genotypeArrays
UCSC track
Common Cell CNV
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Common Cell CNV'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeHudsonalphaCnv", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeHudsonalphaCnv_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeHudsonalphaCnv
UCSC track
HGDP Allele Freq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'HGDP Allele Freq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hgdpGeo", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/hgdpGeo_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/hgdpGeo
UCSC track
HapMap SNPs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'HapMap SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hapmapSnps", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/hapmapSnps_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/hapmapSnps
UCSC track
Tajima's D SNPs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Tajima's D SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tajdSnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/tajdSnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/tajdSnp
UCSC track
DGV Struct Var
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'DGV Struct Var'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("dgv", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/dgv_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/dgv
UCSC track
HGSV Discordant
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'HGSV Discordant'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("kiddEichlerDisc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/kiddEichlerDisc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/kiddEichlerDisc
UCSC track
Segmental Dups
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/genomicSuperDups
UCSC track
Structural Var
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Structural Var'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/cnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/cnp
UCSC track
Exapted Repeats
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Exapted Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exaptedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/exaptedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/exaptedRepeats
UCSC track
RepeatMasker
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rmsk
UCSC track
RepMask 3.2.7
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'RepMask 3.2.7'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmskRM327", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/rmskRM327_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/rmskRM327
UCSC track
Interrupted Rpts
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/nestedRepeats
UCSC track
Intr Rpts 3.2.7
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Intr Rpts 3.2.7'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeatsRM327", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/nestedRepeatsRM327_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/nestedRepeatsRM327
UCSC track
Simple Repeats
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/microsat
UCSC track
Self Chain
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Self Chain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/chainSelf
UCSC track
Genome Variants
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Genome Variants'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pgSnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/pgSnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/pgSnp
UCSC track
NumtS Sequence
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'NumtS Sequence'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("numtSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/numtSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/numtSeq
UCSC track
ENCODE Regions
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'ENCODE Regions'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRegions", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeRegions_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeRegions
UCSC track
Pseudogenes
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Pseudogenes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodePseudogene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodePseudogene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodePseudogene
UCSC track
Known+Pred RNA
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Known+Pred RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeRna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeRna
UCSC track
Vienna RNAz
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Vienna RNAz'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeUViennaRnaz", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeUViennaRnaz_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeUViennaRnaz
UCSC track
BU First Exon
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'BU First Exon'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeBuFirstExon", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeBuFirstExon_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeBuFirstExon
UCSC track
Riken CAGE
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Riken CAGE'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRikenCage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeRikenCage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeRikenCage
UCSC track
Stanf Promoter
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Stanf Promoter'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeStanfordPromoters", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeStanfordPromoters_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeStanfordPromoters
UCSC track
Stanf RTPCR
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Stanf RTPCR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeStanfordRtPcr", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeStanfordRtPcr_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeStanfordRtPcr
UCSC track
36-Way TBA
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track '36-Way TBA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMsaTbaDec07", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeMsaTbaDec07_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeMsaTbaDec07
UCSC track
NHGRI DIPs
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'NHGRI DIPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeIndels", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/encodeIndels_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/encodeIndels
UCSC track
Chromosome Band
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Chromosome Band'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/cytoBand
UCSC track
STS Markers
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/stsMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/stsMap
UCSC track
FISH Clones
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'FISH Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fishClones", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/fishClones_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/fishClones
UCSC track
Recomb Rate
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Recomb Rate'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("recombRate", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/recombRate_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/recombRate
UCSC track
Map Contigs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/ctgPos
UCSC track
Assembly
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/gold
UCSC track
Gap
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/gap
UCSC track
Coverage
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Coverage'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("clonePos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/clonePos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/clonePos
UCSC track
BAC End Pairs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/bacEndPairs
UCSC track
Fosmid End Pairs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Fosmid End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fosEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/fosEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/fosEndPairs
UCSC track
WSSD Duplication
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'WSSD Duplication'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("celeraDupPositive", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/celeraDupPositive_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/celeraDupPositive
UCSC track
RGD QTL
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'RGD QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/rgdQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/rgdQtl
UCSC track
Known Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Known Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/knownGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/knownGene
UCSC track
CCDS
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'CCDS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ccdsGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/ccdsGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/ccdsGene
UCSC track
RefSeq Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/refGene
UCSC track
Other RefSeq
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/mgcFullMrna
UCSC track
ORFeome Clones
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'ORFeome Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("orfeomeMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/orfeomeMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/orfeomeMrna
UCSC track
Vega Pseudogenes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Vega Pseudogenes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vegaPseudoGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/vegaPseudoGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/vegaPseudoGene
UCSC track
Ensembl Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/ensGene
UCSC track
AceView Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'AceView Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acembly", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/acembly_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/acembly
UCSC track
ECgene Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'ECgene Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ECgene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/ECgene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/ECgene
UCSC track
N-SCAN
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/nscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/nscan
UCSC track
SGP Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/sgpGene
UCSC track
Geneid Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/geneid
UCSC track
Genscan Genes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/genscan
UCSC track
Exoniphy
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Exoniphy'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exoniphy", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/exoniphy_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/exoniphy
UCSC track
Augustus
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Augustus'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("augustus", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/augustus_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/augustus
UCSC track
Yale Pseudo
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Yale Pseudo'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pseudoYale", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/pseudoYale_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/pseudoYale
UCSC track
ACEScan
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'ACEScan'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acescan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/acescan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/acescan
UCSC track
EvoFold
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'EvoFold'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evofold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/evofold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/evofold
UCSC track
sno/miRNA
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'sno/miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgRna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/wgRna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/wgRna
UCSC track
ExonWalk
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'ExonWalk'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exonWalk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/exonWalk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/exonWalk
UCSC track
Human mRNAs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Human mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/mrna
UCSC track
Spliced ESTs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/intronEst
UCSC track
Human ESTs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Human ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/est
UCSC track
Other mRNAs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/xenoMrna
UCSC track
H-Inv
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'H-Inv'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("HInvGeneMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/HInvGeneMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/HInvGeneMrna
UCSC track
TIGR Gene Index
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'TIGR Gene Index'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tigrGeneIndex", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/tigrGeneIndex_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/tigrGeneIndex
UCSC track
UniGene
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'UniGene'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("uniGene_2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/uniGene_2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/uniGene_2
UCSC track
Gene Bounds
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Gene Bounds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rnaCluster", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/rnaCluster_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/rnaCluster
UCSC track
Alt-Splicing
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Alt-Splicing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("altGraphX", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/altGraphX_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/altGraphX
UCSC track
Affy GNF1H
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy GNF1H'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1h", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyGnf1h_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyGnf1h
UCSC track
Affy HuEx 1.0
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy HuEx 1.0'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyHuEx1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyHuEx1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyHuEx1
UCSC track
Affy Txn Phase2
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy Txn Phase2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyTxnPhase2b", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyTxnPhase2b_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyTxnPhase2b
UCSC track
Affy U133
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy U133'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyU133_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyU133
UCSC track
Affy U133Plus2
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy U133Plus2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133Plus2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyU133Plus2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyU133Plus2
UCSC track
Affy U95
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy U95'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU95", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyU95_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyU95
UCSC track
Allen Brain
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Allen Brain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allenBrainAli", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/allenBrainAli_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/allenBrainAli
UCSC track
Bertone Yale TAR
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Bertone Yale TAR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("yaleBertoneTars", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/yaleBertoneTars_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/yaleBertoneTars
UCSC track
GNF Atlas 2
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'GNF Atlas 2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gnfAtlas2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/gnfAtlas2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/gnfAtlas2
UCSC track
GNF Ratio
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'GNF Ratio'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyRatio", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/affyRatio_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/affyRatio
UCSC track
CpG Islands
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/cpgIslandExt
UCSC track
Eponine TSS
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Eponine TSS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("eponine", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/eponine_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/eponine
UCSC track
FirstEF
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'FirstEF'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("firstEF", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/firstEF_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/firstEF
UCSC track
PicTar miRNA
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'PicTar miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("picTar", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/picTar_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/picTar
UCSC track
SGMO/EIO CD34 HS
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SGMO/EIO CD34 HS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sangamoDnaseHs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/sangamoDnaseHs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/sangamoDnaseHs
UCSC track
SwitchGear TSS
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SwitchGear TSS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("switchDbTss", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/switchDbTss_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/switchDbTss
UCSC track
T-ScanS miRNA
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'T-ScanS miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("targetScanS", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/targetScanS_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/targetScanS
UCSC track
TFBS Conserved
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'TFBS Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tfbsConsSites", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/tfbsConsSites_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/tfbsConsSites
UCSC track
Vista Enhancers
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Vista Enhancers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vistaEnhancers", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/vistaEnhancers_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/vistaEnhancers
UCSC track
FOX2 CLIP-seq
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'FOX2 CLIP-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fox2ClipSeqComp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/fox2ClipSeqComp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/fox2ClipSeqComp
UCSC track
Most Conserved
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements17way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/phastConsElements17way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/phastConsElements17way
UCSC track
Cons Indels MmCf
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Cons Indels MmCf'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("consIndelsHgMmCanFam", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/consIndelsHgMmCanFam_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/consIndelsHgMmCanFam
UCSC track
Fugu Blat
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Fugu Blat'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blatFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/blatFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/blatFr1
UCSC track
Tetraodon Ecores
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Tetraodon Ecores'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ecoresTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/ecoresTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/ecoresTetNig1
UCSC track
Chimp Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetPanTro1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetPanTro1
UCSC track
Cow Synteny
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Cow Synteny'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("syntenyCow", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/syntenyCow_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/syntenyCow
UCSC track
Cow BAC Ends
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Cow BAC Ends'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacendsCow", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/bacendsCow_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/bacendsCow
UCSC track
Rhesus Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetRheMac2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetRheMac2
UCSC track
Rat Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetMm7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetMm7
UCSC track
Dog Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetCanFam2
UCSC track
Cow Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Cow Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBosTau2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetBosTau2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetBosTau2
UCSC track
Opossum Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetMonDom1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetMonDom1
UCSC track
Chicken Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetGalGal2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetGalGal2
UCSC track
X. tropicalis Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'X. tropicalis Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetXenTro1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetXenTro1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetXenTro1
UCSC track
Zebrafish Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetDanRer3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetDanRer3
UCSC track
Fugu Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Fugu Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetFr1
UCSC track
Tetraodon Chain/Net
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Tetraodon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/chainNetTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/chainNetTetNig1
UCSC track
SNPs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp125", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/snp125_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/snp125
UCSC track
SNP Arrays
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SNP Arrays'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snpArray", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/snpArray_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/snpArray
UCSC track
HapMap SNPs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'HapMap SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hapmapSnps", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/hapmapSnps_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/hapmapSnps
UCSC track
HapMap LD
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'HapMap LD'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hapmapLd", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/hapmapLd_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/hapmapLd
UCSC track
Tajima's D SNPs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Tajima's D SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tajdSnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/tajdSnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/tajdSnp
UCSC track
DGV Struct Var
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'DGV Struct Var'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("dgv", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/dgv_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/dgv
UCSC track
HGSV Validated
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'HGSV Validated'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("kiddEichlerValid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/kiddEichlerValid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/kiddEichlerValid
UCSC track
HGSV Discordant
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'HGSV Discordant'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("kiddEichlerDisc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/kiddEichlerDisc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/kiddEichlerDisc
UCSC track
SNP Recomb Hots
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SNP Recomb Hots'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snpRecombHotspot", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/snpRecombHotspot_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/snpRecombHotspot
UCSC track
Segmental Dups
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/genomicSuperDups
UCSC track
Structural Var
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Structural Var'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/cnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/cnp
UCSC track
RepeatMasker
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/rmsk
UCSC track
Simple Repeats
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/microsat
UCSC track
RIPs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'RIPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("retroposons", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/retroposons_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/retroposons
UCSC track
ENCODE Regions
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'ENCODE Regions'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRegions", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeRegions_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeRegions
UCSC track
Pseudogenes
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Pseudogenes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodePseudogene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodePseudogene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodePseudogene
UCSC track
GIS-PET RNA
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'GIS-PET RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGisRnaPet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeGisRnaPet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeGisRnaPet
UCSC track
Known+Pred RNA
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Known+Pred RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeRna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeRna
UCSC track
UCSC EvoFold
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'UCSC EvoFold'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeEvoFold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeEvoFold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeEvoFold
UCSC track
Vienna RNAz
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Vienna RNAz'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeUViennaRnaz", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeUViennaRnaz_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeUViennaRnaz
UCSC track
Affy Transfrags
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Affy Transfrags'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeAffyRnaTransfrags", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeAffyRnaTransfrags_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeAffyRnaTransfrags
UCSC track
BU First Exon
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'BU First Exon'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeBuFirstExon", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeBuFirstExon_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeBuFirstExon
UCSC track
Riken CAGE
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Riken CAGE'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRikenCage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeRikenCage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeRikenCage
UCSC track
Stanf Promoter
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Stanf Promoter'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeStanfordPromoters", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeStanfordPromoters_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeStanfordPromoters
UCSC track
Stanf RTPCR
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Stanf RTPCR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeStanfordRtPcr", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeStanfordRtPcr_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeStanfordRtPcr
UCSC track
Yale TAR
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Yale TAR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeYaleAffyRNATars", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeYaleAffyRNATars_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeYaleAffyRNATars
UCSC track
GIS ChIP-PET
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'GIS ChIP-PET'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGisChipPetAll", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeGisChipPetAll_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeGisChipPetAll
UCSC track
UCD Ng ChIP Hits
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'UCD Ng ChIP Hits'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeUcDavisChipHits", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeUcDavisChipHits_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeUcDavisChipHits
UCSC track
Yale STAT1 Sites
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Yale STAT1 Sites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeYaleChIPSTAT1Sites", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeYaleChIPSTAT1Sites_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeYaleChIPSTAT1Sites
UCSC track
Yale ChIP Sites
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Yale ChIP Sites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeYaleChipSites", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeYaleChipSites_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeYaleChipSites
UCSC track
Yale ChIP RFBR
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Yale ChIP RFBR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeYaleChipRfbr", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeYaleChipRfbr_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeYaleChipRfbr
UCSC track
Consens Elements
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Consens Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMsaElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeMsaElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeMsaElements
UCSC track
TBA Alignment
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'TBA Alignment'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeTbaAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeTbaAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeTbaAlign
UCSC track
TBA Elements
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'TBA Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeTbaElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeTbaElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeTbaElements
UCSC track
MLAGAN Alignment
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'MLAGAN Alignment'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMlaganAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeMlaganAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeMlaganAlign
UCSC track
MLAGAN Elements
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'MLAGAN Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMlaganElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeMlaganElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeMlaganElements
UCSC track
MAVID Alignment
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'MAVID Alignment'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMavidAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeMavidAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeMavidAlign
UCSC track
MAVID Elements
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'MAVID Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMavidElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeMavidElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeMavidElements
UCSC track
DLESS
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'DLESS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeDless", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeDless_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeDless
UCSC track
NHGRI DIPs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'NHGRI DIPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeIndels", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeIndels_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeIndels
UCSC track
SNP Recomb Hots
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'SNP Recomb Hots'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRecombHotspot", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeRecombHotspot_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeRecombHotspot
UCSC track
Sanger Assoc
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'Sanger Assoc'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeSangerGenoExprAssociation", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeSangerGenoExprAssociation_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeSangerGenoExprAssociation
UCSC track
HapMap SNPs
UCSC
Homo sapiens
9606
hg17
GRanges object from UCSC track 'HapMap SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeHapMapAlleleFreq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg17/database/encodeHapMapAlleleFreq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg17/database/encodeHapMapAlleleFreq
UCSC track
Chromosome Band
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Chromosome Band'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/cytoBand
UCSC track
STS Markers
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/stsMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/stsMap
UCSC track
FISH Clones
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'FISH Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fishClones", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/fishClones_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/fishClones
UCSC track
Recomb Rate
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Recomb Rate'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("recombRate", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/recombRate_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/recombRate
UCSC track
Map Contigs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/ctgPos
UCSC track
Assembly
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/gold
UCSC track
Gap
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/gap
UCSC track
Coverage
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Coverage'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("clonePos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/clonePos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/clonePos
UCSC track
BAC End Pairs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/bacEndPairs
UCSC track
Fosmid End Pairs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Fosmid End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("fosEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/fosEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/fosEndPairs
UCSC track
WSSD Coverage
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'WSSD Coverage'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("celeraCoverage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/celeraCoverage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/celeraCoverage
UCSC track
WSSD Duplication
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'WSSD Duplication'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("celeraDupPositive", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/celeraDupPositive_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/celeraDupPositive
UCSC track
WSSD Overlay
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'WSSD Overlay'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("celeraOverlay", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/celeraOverlay_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/celeraOverlay
UCSC track
Known Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Known Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/knownGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/knownGene
UCSC track
Known Genes II
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Known Genes II'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hg17Kg", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/hg17Kg_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/hg17Kg
UCSC track
RefSeq Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/refGene
UCSC track
Other RefSeq
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/mgcFullMrna
UCSC track
Ensembl Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/ensGene
UCSC track
Ensembl EST Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Ensembl EST Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensEstGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/ensEstGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/ensEstGene
UCSC track
Acembly Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Acembly Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acembly", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/acembly_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/acembly
UCSC track
ECgene Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'ECgene Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ECgene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/ECgene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/ECgene
UCSC track
Twinscan
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Twinscan'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/twinscan
UCSC track
SGP Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/sgpGene
UCSC track
Fgenesh++ Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Fgenesh++ Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("softberryGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/softberryGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/softberryGene
UCSC track
Geneid Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/geneid
UCSC track
Genscan Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/genscan
UCSC track
Exoniphy
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Exoniphy'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exoniphy", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/exoniphy_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/exoniphy
UCSC track
RNA Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'RNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rnaGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/rnaGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/rnaGene
UCSC track
Yale Pseudo
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Yale Pseudo'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pseudoYale", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/pseudoYale_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/pseudoYale
UCSC track
EvoFold
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'EvoFold'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("evofold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/evofold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/evofold
UCSC track
miRNA
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("miRNA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/miRNA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/miRNA
UCSC track
Human mRNAs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Human mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/mrna
UCSC track
Spliced ESTs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/intronEst
UCSC track
Human ESTs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Human ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/est
UCSC track
Other mRNAs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/xenoMrna
UCSC track
H-Inv
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'H-Inv'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("HInvGeneMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/HInvGeneMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/HInvGeneMrna
UCSC track
TIGR Gene Index
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'TIGR Gene Index'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tigrGeneIndex", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/tigrGeneIndex_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/tigrGeneIndex
UCSC track
UniGene
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'UniGene'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("uniGene_2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/uniGene_2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/uniGene_2
UCSC track
Gene Bounds
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Gene Bounds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rnaCluster", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/rnaCluster_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/rnaCluster
UCSC track
Alt-Splicing
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Alt-Splicing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("altGraphX", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/altGraphX_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/altGraphX
UCSC track
Affy GNF1H
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy GNF1H'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1h", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/affyGnf1h_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/affyGnf1h
UCSC track
Affy HuEx 1.0
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy HuEx 1.0'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyHuEx1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/affyHuEx1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/affyHuEx1
UCSC track
Affy U133
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy U133'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU133", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/affyU133_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/affyU133
UCSC track
Affy U95
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy U95'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU95", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/affyU95_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/affyU95
UCSC track
GNF Atlas 2
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'GNF Atlas 2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gnfAtlas2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/gnfAtlas2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/gnfAtlas2
UCSC track
GNF Ratio
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'GNF Ratio'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyRatio", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/affyRatio_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/affyRatio
UCSC track
CpG Islands
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIsland", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/cpgIsland_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/cpgIsland
UCSC track
FirstEF
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'FirstEF'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("firstEF", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/firstEF_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/firstEF
UCSC track
NHGRI DNaseI-HS
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'NHGRI DNaseI-HS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nhgriDnaseHs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/nhgriDnaseHs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/nhgriDnaseHs
UCSC track
TFBS Conserved
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'TFBS Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tfbsCons", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/tfbsCons_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/tfbsCons
UCSC track
Fugu Blat
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Fugu Blat'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blatFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/blatFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/blatFr1
UCSC track
Fugu Ecores
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Fugu Ecores'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ecoresFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/ecoresFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/ecoresFr1
UCSC track
Tetraodon Ecores
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Tetraodon Ecores'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ecoresTetraodon", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/ecoresTetraodon_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/ecoresTetraodon
UCSC track
Chimp Recip Chain
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Chimp Recip Chain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rBestChainPanTro1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/rBestChainPanTro1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/rBestChainPanTro1
UCSC track
Chimp Recip Net
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Chimp Recip Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rBestNetPanTro1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/rBestNetPanTro1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/rBestNetPanTro1
UCSC track
Chimp Deletions
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Chimp Deletions'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chimpDels", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chimpDels_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chimpDels
UCSC track
Chimp Diff
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Chimp Diff'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chimpSimpleDiff", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chimpSimpleDiff_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chimpSimpleDiff
UCSC track
Rat Chain/Net
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chainNetRn3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chainNetRn3
UCSC track
Mouse Chain/Net
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chainNetMm6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chainNetMm6
UCSC track
Chicken Chain/Net
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chainNetGalGal2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chainNetGalGal2
UCSC track
Fugu Chain/Net
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Fugu Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chainNetFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chainNetFr1
UCSC track
HapMap LD
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'HapMap LD'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("hapmapLd", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/hapmapLd_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/hapmapLd
UCSC track
Tajima's D SNPs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Tajima's D SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tajdSnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/tajdSnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/tajdSnp
UCSC track
SNP Recomb Hots
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'SNP Recomb Hots'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snpRecombHotspot", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/snpRecombHotspot_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/snpRecombHotspot
UCSC track
Segmental Dups
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/genomicSuperDups
UCSC track
Structural Var
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Structural Var'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/cnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/cnp
UCSC track
RepeatMasker
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/rmsk
UCSC track
Microsatellites
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Microsatellites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vntr", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/vntr_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/vntr
UCSC track
Simple Repeats
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/simpleRepeat
UCSC track
Self Chain
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Self Chain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/chainSelf
UCSC track
ENCODE Regions
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'ENCODE Regions'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRegions", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeRegions_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeRegions
UCSC track
Gencode Genes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Gencode Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGencodeGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeGencodeGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeGencodeGene
UCSC track
Gencode Introns
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Gencode Introns'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGencodeIntron", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeGencodeIntron_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeGencodeIntron
UCSC track
GIS-PET RNA
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'GIS-PET RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGisRnaPet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeGisRnaPet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeGisRnaPet
UCSC track
Known+Pred RNA
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Known+Pred RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeRna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeRna
UCSC track
TBA23 EvoFold
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'TBA23 EvoFold'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encode_tba23EvoFold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encode_tba23EvoFold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encode_tba23EvoFold
UCSC track
Affy Transfrags
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy Transfrags'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeAffyRnaTransfrags", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeAffyRnaTransfrags_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeAffyRnaTransfrags
UCSC track
Riken CAGE
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Riken CAGE'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRikenCage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeRikenCage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeRikenCage
UCSC track
Yale RNA
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Yale RNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeYaleAffyRNATransMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeYaleAffyRNATransMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeYaleAffyRNATransMap
UCSC track
Yale TAR
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Yale TAR'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeYaleAffyRNATars", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeYaleAffyRNATars_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeYaleAffyRNATars
UCSC track
Affy 25bp Probes
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy 25bp Probes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeAffyEncode25bpProbes", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeAffyEncode25bpProbes_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeAffyEncode25bpProbes
UCSC track
Affy Sites
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Affy Sites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeAffyChIpHl60Sites", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeAffyChIpHl60Sites_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeAffyChIpHl60Sites
UCSC track
GIS p53 5FU HCT116
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'GIS p53 5FU HCT116'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGisChipPet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeGisChipPet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeGisChipPet
UCSC track
Consens Elements
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Consens Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeAllElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeAllElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeAllElements
UCSC track
TBA Alignment
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'TBA Alignment'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeTbaAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeTbaAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeTbaAlign
UCSC track
TBA Elements
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'TBA Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeTbaElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeTbaElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeTbaElements
UCSC track
MLAGAN Alignment
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'MLAGAN Alignment'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMlaganAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeMlaganAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeMlaganAlign
UCSC track
MLAGAN Elements
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'MLAGAN Elements'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeMlaganElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeMlaganElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeMlaganElements
UCSC track
Reseq Regions
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Reseq Regions'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeReseqRegions", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeReseqRegions_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeReseqRegions
UCSC track
NHGRI DIPs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'NHGRI DIPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeIndels", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeIndels_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeIndels
UCSC track
SNP Recomb Hots
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'SNP Recomb Hots'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeRecombHotspot", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeRecombHotspot_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeRecombHotspot
UCSC track
HapMap SNPs
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'HapMap SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeHapMapAlleleFreq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeHapMapAlleleFreq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeHapMapAlleleFreq
UCSC track
Gencode Unann
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Gencode Unann'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeGencodeRegions", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeGencodeRegions_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeGencodeRegions
UCSC track
Consens Unann TF
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Consens Unann TF'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeWorkshopSelections", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeWorkshopSelections_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeWorkshopSelections
UCSC track
Unann Transfrags
UCSC
Homo sapiens
9606
hg16
GRanges object from UCSC track 'Unann Transfrags'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("encodeNoncodingTransFrags", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg16/database/encodeNoncodingTransFrags_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg16/database/encodeNoncodingTransFrags
UCSC track
Assembly
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/gold
UCSC track
Gap
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/gap
UCSC track
Ensembl Assembly
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Ensembl Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/ensemblGeneScaffold
UCSC track
Other RefSeq
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/ensGene
UCSC track
Genscan Genes
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/genscan
UCSC track
Spliced ESTs
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/intronEst
UCSC track
Alpaca ESTs
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Alpaca ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/est
UCSC track
CpG Islands
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Vicugna pacos
30538
vicPac1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/vicPac1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/vicPac1/database/simpleRepeat
UCSC track
Assembly
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/gold
UCSC track
Gap
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/gap
UCSC track
Other RefSeq
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/genscan
UCSC track
Armadillo mRNAs
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Armadillo mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/mrna
UCSC track
Other mRNAs
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/xenoMrna
UCSC track
CpG Islands
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Dasypus novemcinctus
9361
dasNov3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dasNov3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dasNov3/database/simpleRepeat
UCSC track
Assembly
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/gold
UCSC track
Gap
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/gap
UCSC track
Other RefSeq
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/ensGene
UCSC track
Genscan Genes
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/genscan
UCSC track
Bushbaby mRNAs
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Bushbaby mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/mrna
UCSC track
Other mRNAs
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/xenoMrna
UCSC track
CpG Islands
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Otolemur garnettii
30611
otoGar3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/otoGar3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/otoGar3/database/simpleRepeat
UCSC track
Assembly
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/gold
UCSC track
Gap
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/gap
UCSC track
Other RefSeq
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/genscan
UCSC track
Baboon mRNAs
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Baboon mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/mrna
UCSC track
Other mRNAs
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/xenoMrna
UCSC track
CpG Islands
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/cpgIslandExt
UCSC track
Gorilla Chain/Net
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Gorilla Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGorGor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/chainNetGorGor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/chainNetGorGor3
UCSC track
Marmoset Chain/Net
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/chainNetCalJac3
UCSC track
Mouse Chain/Net
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Papio hamadryas
9557
papHam1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papHam1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papHam1/database/simpleRepeat
UCSC track
Assembly
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/gold
UCSC track
Gap
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/gap
UCSC track
RefSeq Genes
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/refGene
UCSC track
Other RefSeq
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/genscan
UCSC track
Baboon mRNAs
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Baboon mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/mrna
UCSC track
Spliced ESTs
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/intronEst
UCSC track
Baboon ESTs
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Baboon ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/est
UCSC track
Other mRNAs
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/xenoMrna
UCSC track
CpG Islands
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Papio anubis
9555
papAnu2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/papAnu2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/papAnu2/database/simpleRepeat
UCSC track
Assembly
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/gold
UCSC track
Gap
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/gap
UCSC track
RefSeq Genes
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/refGene
UCSC track
Other RefSeq
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/genscan
UCSC track
Cat mRNAs
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Cat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/mrna
UCSC track
Spliced ESTs
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/intronEst
UCSC track
Cat ESTs
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Cat ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/est
UCSC track
Other mRNAs
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/xenoMrna
UCSC track
CpG Islands
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Felis catus
9685
felCat5
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat5/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat5/database/simpleRepeat
UCSC track
Assembly
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/gold
UCSC track
Scaffolds
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/ctgPos2
UCSC track
Gap
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/gap
UCSC track
RefSeq Genes
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/refGene
UCSC track
Other RefSeq
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/nscanGene
UCSC track
tRNA Genes
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/tRNAs
UCSC track
Human Proteins
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/blastHg18KG
UCSC track
Cat mRNAs
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Cat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/mrna
UCSC track
Spliced ESTs
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/intronEst
UCSC track
Cat ESTs
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Cat ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/est
UCSC track
Other mRNAs
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/xenoMrna
UCSC track
CpG Islands
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/cpgIslandExt
UCSC track
Panda Chain/Net
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Panda Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAilMel1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/chainNetAilMel1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/chainNetAilMel1
UCSC track
Dog Chain/Net
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/chainNetCanFam2
UCSC track
Mouse Chain/Net
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/chainNetMm9
UCSC track
Human Chain/Net
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/chainNetHg19
UCSC track
Opossum Chain/Net
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/chainNetMonDom5
UCSC track
RepeatMasker
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Felis catus
9685
felCat4
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat4/database/simpleRepeat
UCSC track
Assembly
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/gold
UCSC track
Gap
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/gap
UCSC track
Ensembl Assembly
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Ensembl Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/ensemblGeneScaffold
UCSC track
RefSeq Genes
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/refGene
UCSC track
Other RefSeq
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/ensGene
UCSC track
N-SCAN
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/nscanGene
UCSC track
SGP Genes
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/sgpGene
UCSC track
Geneid Genes
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/geneid
UCSC track
Genscan Genes
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/genscan
UCSC track
tRNA Genes
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/tRNAs
UCSC track
Human Proteins
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/blastHg18KG
UCSC track
Cat mRNAs
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Cat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/mrna
UCSC track
Spliced ESTs
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/intronEst
UCSC track
Cat ESTs
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Cat ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/est
UCSC track
Other mRNAs
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/xenoMrna
UCSC track
CpG Islands
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/cpgIslandExt
UCSC track
Most Conserved
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements4way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/phastConsElements4way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/phastConsElements4way
UCSC track
Dog Chain/Net
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/chainNetCanFam2
UCSC track
Mouse Chain/Net
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm8", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/chainNetMm8_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/chainNetMm8
UCSC track
Human Chain/Net
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/chainNetHg19
UCSC track
RepeatMasker
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/rmsk
UCSC track
Simple Repeats
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Felis catus
9685
felCat3
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/felCat3/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/felCat3/database/microsat
UCSC track
Assembly
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/gold
UCSC track
Gap
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/gap
UCSC track
RefSeq Genes
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/refGene
UCSC track
Other RefSeq
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/ensGene
UCSC track
Genscan Genes
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/genscan
UCSC track
Chimp mRNAs
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Chimp mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/mrna
UCSC track
Spliced ESTs
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/intronEst
UCSC track
Chimp ESTs
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Chimp ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/est
UCSC track
Other mRNAs
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/xenoMrna
UCSC track
CpG Islands
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/cpgIslandExt
UCSC track
Rhesus Chain/Net
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/chainNetRheMac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/chainNetRheMac3
UCSC track
Mouse Chain/Net
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Pan troglodytes
9598
panTro4
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro4/database/simpleRepeat
UCSC track
Assembly
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/gold
UCSC track
Scaffolds
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/ctgPos2
UCSC track
Gap
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/gap
UCSC track
RefSeq Genes
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/refGene
UCSC track
Other RefSeq
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/nscanGene
UCSC track
tRNA Genes
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/tRNAs
UCSC track
Chimp mRNAs
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Chimp mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/mrna
UCSC track
Spliced ESTs
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/intronEst
UCSC track
Chimp ESTs
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Chimp ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/est
UCSC track
CpG Islands
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/cpgIslandExt
UCSC track
Zebrafish Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetDanRer7
UCSC track
Chicken Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetGalGal3
UCSC track
Human Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetHg19
UCSC track
Mouse Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetMm9
UCSC track
RepeatMasker
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/simpleRepeat
UCSC track
Assembly
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/gold
UCSC track
Gap
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/gap
UCSC track
RefSeq Genes
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/refGene
UCSC track
Other RefSeq
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/ensGene
UCSC track
N-SCAN
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/nscanGene
UCSC track
Genscan Genes
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/genscan
UCSC track
tRNA Genes
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/tRNAs
UCSC track
Chimp mRNAs
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Chimp mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/mrna
UCSC track
Spliced ESTs
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/intronEst
UCSC track
Chimp ESTs
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Chimp ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/est
UCSC track
Other mRNAs
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/xenoMrna
UCSC track
CpG Islands
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/cpgIslandExt
UCSC track
NHGRI BiP
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'NHGRI BiP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/wgEncodeNhgriBip
UCSC track
Human Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetHg19
UCSC track
Rhesus Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetRheMac2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetRheMac2
UCSC track
Marmoset Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetCalJac3
UCSC track
Rat Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetMm9
UCSC track
Dog Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetCanFam2
UCSC track
Horse Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetEquCab1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetEquCab1
UCSC track
Chicken Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetGalGal2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetGalGal2
UCSC track
Zebrafish Chain/Net
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/chainNetDanRer4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/chainNetDanRer4
UCSC track
Neandertal Seq
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Neandertal Seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ntSeqReads", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/ntSeqReads_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/ntSeqReads
UCSC track
RepeatMasker
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/rmsk
UCSC track
Simple Repeats
UCSC
Pan troglodytes
9598
panTro2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro2/database/simpleRepeat
UCSC track
Contigs
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/ctgPos
UCSC track
Scaffolds
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/gold
UCSC track
Gap
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/gap
UCSC track
BAC End Pairs
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/bacEndPairs
UCSC track
RefSeq Genes
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/refGene
UCSC track
Other RefSeq
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/ensGene
UCSC track
Twinscan
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Twinscan'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/twinscan
UCSC track
Geneid Genes
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/geneid
UCSC track
Genscan Genes
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/genscan
UCSC track
Chimp mRNAs
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Chimp mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/mrna
UCSC track
Spliced ESTs
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/intronEst
UCSC track
Chimp ESTs
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Chimp ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/est
UCSC track
CpG Islands
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIsland", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/cpgIsland_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/cpgIsland
UCSC track
Fugu Blat
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Fugu Blat'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blatFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/blatFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/blatFr1
UCSC track
Human Best
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Human Best'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("axtNetHg16", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/axtNetHg16_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/axtNetHg16
UCSC track
Human Deletions
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Human Deletions'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("humanDels", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/humanDels_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/humanDels
UCSC track
Mouse Chain/Net
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm8", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/chainNetMm8_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/chainNetMm8
UCSC track
SNPs
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp125", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/snp125_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/snp125
UCSC track
RepeatMasker
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/rmsk
UCSC track
Assembly
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/gold
UCSC track
Scaffolds
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/ctgPos2
UCSC track
Gap
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/gap
UCSC track
RefSeq Genes
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/refGene
UCSC track
Genscan Genes
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/genscan
UCSC track
Cow mRNAs
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Cow mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/mrna
UCSC track
Spliced ESTs
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/intronEst
UCSC track
Cow ESTs
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Cow ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/est
UCSC track
CpG Islands
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/cpgIslandExt
UCSC track
Rat Chain/Net
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/chainNetMm10
UCSC track
Human Chain/Net
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/chainNetHg19
UCSC track
Platypus Chain/Net
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/chainNetOrnAna1
UCSC track
RepeatMasker
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/simpleRepeat
UCSC track
Assembly
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/gold
UCSC track
Scaffolds
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/ctgPos2
UCSC track
Gap
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/gap
UCSC track
RefSeq Genes
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/refGene
UCSC track
Other RefSeq
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/ensGene
UCSC track
tRNA Genes
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/tRNAs
UCSC track
Cow mRNAs
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Cow mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/mrna
UCSC track
Spliced ESTs
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/intronEst
UCSC track
Cow ESTs
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Cow ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/est
UCSC track
Other mRNAs
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/xenoMrna
UCSC track
CpG Islands
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/cpgIslandExt
UCSC track
Dog Chain/Net
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/chainNetCanFam2
UCSC track
Rat Chain/Net
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/chainNetMm9
UCSC track
Human Chain/Net
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/chainNetHg19
UCSC track
Opossum Chain/Net
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/chainNetMonDom5
UCSC track
Platypus Chain/Net
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/chainNetOrnAna1
UCSC track
RepeatMasker
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Bos taurus
9913
bosTau6
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau6/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau6/database/simpleRepeat
UCSC track
Assembly
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/gold
UCSC track
Gap
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/gap
UCSC track
RefSeq Genes
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/refGene
UCSC track
Other RefSeq
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/mgcFullMrna
UCSC track
Ensembl Genes
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/ensGene
UCSC track
N-SCAN
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/nscanGene
UCSC track
Genscan Genes
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/genscan
UCSC track
tRNA Genes
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/tRNAs
UCSC track
Human Proteins
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/blastHg18KG
UCSC track
Cow mRNAs
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Cow mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/mrna
UCSC track
Spliced ESTs
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/intronEst
UCSC track
Cow ESTs
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Cow ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/est
UCSC track
Other mRNAs
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/xenoMrna
UCSC track
CpG Islands
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/cpgIslandExt
UCSC track
NHGRI BiP
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'NHGRI BiP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/wgEncodeNhgriBip
UCSC track
Most Conserved
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements5way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/phastConsElements5way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/phastConsElements5way
UCSC track
Dog Chain/Net
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/chainNetCanFam2
UCSC track
Mouse Chain/Net
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/chainNetMm9
UCSC track
RepeatMasker
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/simpleRepeat
UCSC track
Assembly
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/gold
UCSC track
Gap
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/gap
UCSC track
RefSeq Genes
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/refGene
UCSC track
Other RefSeq
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/mgcFullMrna
UCSC track
Ensembl Genes
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/ensGene
UCSC track
SGP Genes
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/sgpGene
UCSC track
Geneid Genes
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/geneid
UCSC track
Genscan Genes
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/genscan
UCSC track
Human Proteins
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/blastHg18KG
UCSC track
Cow mRNAs
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Cow mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/mrna
UCSC track
Spliced ESTs
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/intronEst
UCSC track
Cow ESTs
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Cow ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/est
UCSC track
Other mRNAs
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/xenoMrna
UCSC track
CpG Islands
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/cpgIslandExt
UCSC track
Rat Chain/Net
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/chainNetMm9
UCSC track
Human Chain/Net
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/chainNetHg18
UCSC track
SNPs (127)
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'SNPs (127)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp127", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/snp127_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/snp127
UCSC track
RepeatMasker
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/rmsk
UCSC track
Simple Repeats
UCSC
Bos taurus
9913
bosTau3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau3/database/simpleRepeat
UCSC track
Assembly
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/gold
UCSC track
Gap
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/gap
UCSC track
RefSeq Genes
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/refGene
UCSC track
Other RefSeq
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/xenoRefGene
UCSC track
SGP Genes
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/sgpGene
UCSC track
Geneid Genes
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/geneid
UCSC track
Genscan Genes
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/genscan
UCSC track
Human Proteins
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/blastHg18KG
UCSC track
Cow mRNAs
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Cow mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/mrna
UCSC track
Spliced ESTs
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/intronEst
UCSC track
Cow ESTs
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Cow ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/est
UCSC track
CpG Islands
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/cpgIslandExt
UCSC track
Rat Chain/Net
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm8", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/chainNetMm8_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/chainNetMm8
UCSC track
Human Chain/Net
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/chainNetHg18
UCSC track
RepeatMasker
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/rmsk
UCSC track
Simple Repeats
UCSC
Bos taurus
9913
bosTau2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau2/database/simpleRepeat
UCSC track
Assembly
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/gold
UCSC track
Gap
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/gap
UCSC track
RefSeq Genes
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/refGene
UCSC track
Other RefSeq
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/ensGene
UCSC track
Genscan Genes
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/genscan
UCSC track
Dog mRNAs
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Dog mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/mrna
UCSC track
Spliced ESTs
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/intronEst
UCSC track
Dog ESTs
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Dog ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/est
UCSC track
Other mRNAs
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/xenoMrna
UCSC track
CpG Islands
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/chainNetMm10
UCSC track
Human Chain/Net
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/chainNetHg19
UCSC track
RepeatMasker
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/nestedRepeats
UCSC track
Assembly
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/gold
UCSC track
Gap
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/gap
UCSC track
BAC End Pairs
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/bacEndPairs
UCSC track
Uncertified
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Uncertified'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("uncertified", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/uncertified_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/uncertified
UCSC track
RefSeq Genes
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/refGene
UCSC track
Ensembl Genes
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/ensGene
UCSC track
N-SCAN
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/nscanGene
UCSC track
tRNA Genes
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/tRNAs
UCSC track
Dog mRNAs
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Dog mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/mrna
UCSC track
Spliced ESTs
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/intronEst
UCSC track
Dog ESTs
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Dog ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/est
UCSC track
CpG Islands
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/cpgIslandExt
UCSC track
NHGRI BiP
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'NHGRI BiP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/wgEncodeNhgriBip
UCSC track
Panda Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Panda Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAilMel1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetAilMel1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetAilMel1
UCSC track
Horse Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetEquCab2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetEquCab2
UCSC track
bosTau7 Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'bosTau7 Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBosTau7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetBosTau7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetBosTau7
UCSC track
Rat Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetMm9
UCSC track
Marmoset Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetCalJac3
UCSC track
Cat Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Cat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFelCat4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetFelCat4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetFelCat4
UCSC track
Chimp Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetPanTro3
UCSC track
Human Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetHg19
UCSC track
Opossum Chain/Net
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainNetMonDom5
UCSC track
SNPs (131)
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'SNPs (131)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp131", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/snp131_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/snp131
UCSC track
RepeatMasker
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/rmsk
UCSC track
Simple Repeats
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/microsat
UCSC track
Self Chain
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Self Chain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/chainSelf
UCSC track
Assembly
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/gold
UCSC track
Gap
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/gap
UCSC track
BAC End Pairs
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/bacEndPairs
UCSC track
RefSeq Genes
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/refGene
UCSC track
Other RefSeq
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/ensGene
UCSC track
Twinscan
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Twinscan'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/twinscan
UCSC track
N-SCAN
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/nscanGene
UCSC track
Genscan Genes
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/genscan
UCSC track
Dog mRNAs
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Dog mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/mrna
UCSC track
Spliced ESTs
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/intronEst
UCSC track
Dog ESTs
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Dog ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/est
UCSC track
Fugu Blat
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Fugu Blat'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blatFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/blatFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/blatFr1
UCSC track
Mouse Chain/Net
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/chainNetMm6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/chainNetMm6
UCSC track
Human Chain/Net
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg17", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/chainNetHg17_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/chainNetHg17
UCSC track
SNPs
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'SNPs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp125", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/snp125_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/snp125
UCSC track
Segmental Dups
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/genomicSuperDups
UCSC track
RepeatMasker
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/rmsk
UCSC track
Simple Repeats
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Canis familiaris
9615
canFam1
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam1/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam1/database/microsat
UCSC track
Assembly
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/gold
UCSC track
Gap
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/gap
UCSC track
Other RefSeq
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/genscan
UCSC track
CpG Islands
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/rmsk
UCSC track
Assembly
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/gold
UCSC track
Gap
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/gap
UCSC track
Ensembl Genes
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/ensGene
UCSC track
tRNA Genes
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/tRNAs
UCSC track
Human Proteins
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/blastHg18KG
UCSC track
Elephant mRNAs
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Elephant mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/mrna
UCSC track
RepeatMasker
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/rmsk
UCSC track
Simple Repeats
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/simpleRepeat
UCSC track
Assembly
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/gold
UCSC track
Gap
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/gap
UCSC track
Other RefSeq
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/genscan
UCSC track
Other mRNAs
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/xenoMrna
UCSC track
CpG Islands
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Nomascus leucogenys
61853
nomLeu2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu2/database/simpleRepeat
UCSC track
Assembly
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/gold
UCSC track
Gap
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/gap
UCSC track
Other RefSeq
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/ensGene
UCSC track
tRNA Genes
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/tRNAs
UCSC track
Gibbon mRNAs
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Gibbon mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/mrna
UCSC track
Other mRNAs
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/xenoMrna
UCSC track
Gorilla Chain/Net
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Gorilla Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGorGor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/chainNetGorGor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/chainNetGorGor3
UCSC track
Human Chain/Net
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/chainNetHg19
UCSC track
Mouse Chain/Net
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Nomascus leucogenys
61853
nomLeu1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/nomLeu1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/nomLeu1/database/simpleRepeat
UCSC track
Assembly
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/gold
UCSC track
Gap
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/gap
UCSC track
Other RefSeq
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/ensGene
UCSC track
tRNA Genes
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/tRNAs
UCSC track
Gorilla mRNAs
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Gorilla mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/mrna
UCSC track
Other mRNAs
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/xenoMrna
UCSC track
Chimp Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetPanTro3
UCSC track
Human Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetHg19
UCSC track
Orangutan Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetPonAbe2
UCSC track
Gibbon Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Gibbon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetNomLeu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetNomLeu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetNomLeu1
UCSC track
Baboon Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Baboon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPapHam1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetPapHam1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetPapHam1
UCSC track
Rhesus Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetRheMac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetRheMac3
UCSC track
Marmoset Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetCalJac3
UCSC track
Tarsier Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Tarsier Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetTarSyr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetTarSyr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetTarSyr1
UCSC track
Mouse lemur Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Mouse lemur Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMicMur1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetMicMur1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetMicMur1
UCSC track
Mouse Chain/Net
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Gorilla gorilla
9593
gorGor3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gorGor3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gorGor3/database/simpleRepeat
UCSC track
Assembly
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/gold
UCSC track
Gap
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/gap
UCSC track
RefSeq Genes
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/refGene
UCSC track
tRNA Genes
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/tRNAs
UCSC track
Guinea pig mRNAs
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Guinea pig mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/mrna
UCSC track
Guinea pig ESTs
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Guinea pig ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/est
UCSC track
Other mRNAs
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/xenoMrna
UCSC track
Human Chain/Net
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/chainNetHg19
UCSC track
RepeatMasker
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/simpleRepeat
UCSC track
Assembly
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/gold
UCSC track
Scaffolds
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/ctgPos2
UCSC track
Gap
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/gap
UCSC track
RefSeq Genes
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/refGene
UCSC track
Other RefSeq
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/ensGene
UCSC track
N-SCAN
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/nscanGene
UCSC track
tRNA Genes
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/tRNAs
UCSC track
Human Proteins
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/blastHg18KG
UCSC track
Horse mRNAs
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Horse mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/mrna
UCSC track
Spliced ESTs
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/intronEst
UCSC track
Horse ESTs
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Horse ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/est
UCSC track
Dog Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetCanFam2
UCSC track
Sheep Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Sheep Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOviAri1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetOviAri1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetOviAri1
UCSC track
Mouse Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetMm9
UCSC track
Chimp Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetPanTro3
UCSC track
Opossum Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetMonDom5
UCSC track
Platypus Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetOrnAna1
UCSC track
Chicken Chain/Net
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/chainNetGalGal3
UCSC track
RepeatMasker
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Equus caballus
9796
equCab2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab2/database/simpleRepeat
UCSC track
Assembly
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/gold
UCSC track
Gap
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/gap
UCSC track
RefSeq Genes
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/refGene
UCSC track
Other RefSeq
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/nscanGene
UCSC track
SGP Genes
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/sgpGene
UCSC track
Geneid Genes
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/geneid
UCSC track
tRNA Genes
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/tRNAs
UCSC track
Human Proteins
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/blastHg18KG
UCSC track
Horse mRNAs
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Horse mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/mrna
UCSC track
Spliced ESTs
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/intronEst
UCSC track
Horse ESTs
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Horse ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/est
UCSC track
Other mRNAs
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/xenoMrna
UCSC track
Dog Chain/Net
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/chainNetCanFam2
UCSC track
Rat Chain/Net
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/chainNetMm9
UCSC track
Chimp Chain/Net
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/chainNetPanTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/chainNetPanTro2
UCSC track
Human Chain/Net
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/chainNetHg18
UCSC track
Assembly
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/gold
UCSC track
Gap
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/gap
UCSC track
Other RefSeq
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/xenoRefGene
UCSC track
Kangaroo rat mRNAs
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Kangaroo rat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/mrna
UCSC track
Other mRNAs
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/xenoMrna
UCSC track
RepeatMasker
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/simpleRepeat
UCSC track
Assembly
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/gold
UCSC track
Gap
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/gap
UCSC track
Other RefSeq
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/xenoRefGene
UCSC track
Manatee mRNAs
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'Manatee mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/mrna
UCSC track
Other mRNAs
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/xenoMrna
UCSC track
CpG Islands
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Trichechus manatus
9778
triMan1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/triMan1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/triMan1/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/gold
UCSC track
Scaffolds
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Scaffolds'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/ctgPos2
UCSC track
Gap
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/gap
UCSC track
Quality Scores
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Quality Scores'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("qualityBw", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/qualityBw_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/qualityBw
UCSC track
Bac Ends
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Bac Ends'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEnds", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/bacEnds_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/bacEnds
UCSC track
Bac End Singles
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Bac End Singles'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndCalJac3Singles", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/bacEndCalJac3Singles_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/bacEndCalJac3Singles
UCSC track
Other RefSeq
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/ensGene
UCSC track
N-SCAN
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/nscanGene
UCSC track
Marmoset mRNAs
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Marmoset mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/mrna
UCSC track
Spliced ESTs
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/intronEst
UCSC track
Marmoset ESTs
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Marmoset ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/est
UCSC track
CpG Islands
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/cpgIslandExt
UCSC track
Baboon Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Baboon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPapHam1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetPapHam1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetPapHam1
UCSC track
Orangutan Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetPonAbe2
UCSC track
Gorilla Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Gorilla Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGorGor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetGorGor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetGorGor3
UCSC track
Chimp Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetPanTro3
UCSC track
Mouse lemur Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Mouse lemur Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMicMur1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetMicMur1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetMicMur1
UCSC track
Mouse Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetMm9
UCSC track
Mouse Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetMm10
UCSC track
Opossum Chain/Net
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/chainNetMonDom5
UCSC track
RepeatMasker
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Callithrix jacchus
9483
calJac3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac3/database/nestedRepeats
UCSC track
Assembly
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/gold
UCSC track
Gap
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/gap
UCSC track
RefSeq Genes
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/refGene
UCSC track
Other RefSeq
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/nscanGene
UCSC track
Marmoset mRNAs
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Marmoset mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/mrna
UCSC track
Spliced ESTs
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/intronEst
UCSC track
Marmoset ESTs
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Marmoset ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/est
UCSC track
Most Conserved
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements9way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/phastConsElements9way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/phastConsElements9way
UCSC track
Chimp Chain/Net
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/chainNetPanTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/chainNetPanTro2
UCSC track
RepeatMasker
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/rmsk
UCSC track
Assembly
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/gold
UCSC track
Gap
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/gap
UCSC track
Other RefSeq
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/ensGene
UCSC track
Megabat mRNAs
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Megabat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/mrna
UCSC track
CpG Islands
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/simpleRepeat
UCSC track
Gap
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/gap
UCSC track
Other RefSeq
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/xenoRefGene
UCSC track
Human Proteins
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/blastHg18KG
UCSC track
Microbat mRNAs
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Microbat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/mrna
UCSC track
Other mRNAs
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/xenoMrna
UCSC track
RepeatMasker
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/rmsk
UCSC track
Interrupted Rpts
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Myotis lucifugus
59463
myoLuc2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/myoLuc2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/myoLuc2/database/simpleRepeat
UCSC track
Contigs
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("assemblyFrags", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/assemblyFrags_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/assemblyFrags
UCSC track
Assembly
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/gold
UCSC track
Gap
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/gap
UCSC track
GRC Incident
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'GRC Incident'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("grcIncidentDb", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/grcIncidentDb_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/grcIncidentDb
UCSC track
UCSC Genes
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'UCSC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/knownGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/knownGene
UCSC track
Alt Events
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Alt Events'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownAlt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/knownAlt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/knownAlt
UCSC track
RefSeq Genes
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/refGene
UCSC track
Other RefSeq
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/mgcFullMrna
UCSC track
Ensembl Genes
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/ensGene
UCSC track
Genscan Genes
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/genscan
UCSC track
tRNA Genes
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/tRNAs
UCSC track
Spliced ESTs
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/intronEst
UCSC track
Mouse ESTs
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Mouse ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/est
UCSC track
qPCR Primers
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'qPCR Primers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("qPcrPrimers", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/qPcrPrimers_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/qPcrPrimers
UCSC track
Glires Chain/Net
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Glires Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gliresChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/gliresChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/gliresChainNet
UCSC track
Placental Chain/Net
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Placental Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("placentalChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/placentalChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/placentalChainNet
UCSC track
Vertebrate Chain/Net
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Vertebrate Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("vertebrateChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/vertebrateChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/vertebrateChainNet
UCSC track
RepeatMasker
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/rmsk
UCSC track
WM + SDust
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Mus musculus
10090
mm10
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm10/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm10/database/microsat
UCSC track
STS Markers
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMapMouseNew", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/stsMapMouseNew_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/stsMapMouseNew
UCSC track
Map Contigs
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/ctgPos
UCSC track
Assembly
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/gold
UCSC track
Publications
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Publications'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("pubs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/pubs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/pubs
UCSC track
BAC End Pairs
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/bacEndPairs
UCSC track
MGI QTL
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'MGI QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/jaxQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/jaxQtl
UCSC track
GRC Incident
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'GRC Incident'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("grcIncidentDb", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/grcIncidentDb_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/grcIncidentDb
UCSC track
Wiki Track
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Wiki Track'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wikiTrack", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wikiTrack_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wikiTrack
UCSC track
Old UCSC Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Old UCSC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGeneOld4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/knownGeneOld4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/knownGeneOld4
UCSC track
Alt Events
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Alt Events'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownAlt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/knownAlt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/knownAlt
UCSC track
CCDS
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'CCDS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ccdsGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/ccdsGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/ccdsGene
UCSC track
Other RefSeq
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/mgcFullMrna
UCSC track
ORFeome Clones
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'ORFeome Clones'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("orfeomeMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/orfeomeMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/orfeomeMrna
UCSC track
Ensembl Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/ensGene
UCSC track
AceView Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'AceView Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("acembly", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/acembly_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/acembly
UCSC track
N-SCAN
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/nscanGene
UCSC track
Geneid Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/geneid
UCSC track
Genscan Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/genscan
UCSC track
Exoniphy
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Exoniphy'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("exoniphy", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/exoniphy_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/exoniphy
UCSC track
tRNA Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/tRNAs
UCSC track
NIA Gene Index
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'NIA Gene Index'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("NIAGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/NIAGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/NIAGene
UCSC track
miRNA
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("miRNA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/miRNA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/miRNA
UCSC track
IKMC Genes
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'IKMC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ikmc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/ikmc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/ikmc
UCSC track
Transcriptome
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Transcriptome'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("transcriptome", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/transcriptome_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/transcriptome
UCSC track
Human Proteins
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/intronEst
UCSC track
Mouse ESTs
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Mouse ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/est
UCSC track
Other mRNAs
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/xenoMrna
UCSC track
MGI RepTranscrpt
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'MGI RepTranscrpt'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxRepTranscript", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/jaxRepTranscript_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/jaxRepTranscript
UCSC track
MGI Phenotype
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'MGI Phenotype'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxPhenotype", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/jaxPhenotype_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/jaxPhenotype
UCSC track
MGI Gene Trap
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'MGI Gene Trap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxGeneTrap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/jaxGeneTrap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/jaxGeneTrap
UCSC track
Allen Brain
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Allen Brain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allenBrainAli", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/allenBrainAli_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/allenBrainAli
UCSC track
GNF Atlas 2
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'GNF Atlas 2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gnfAtlas2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/gnfAtlas2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/gnfAtlas2
UCSC track
GNF U74B
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'GNF U74B'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnfU74B", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/affyGnfU74B_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/affyGnfU74B
UCSC track
GNF U74C
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'GNF U74C'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnfU74C", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/affyGnfU74C_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/affyGnfU74C
UCSC track
Affy GNF1M
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Affy GNF1M'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1m", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/affyGnf1m_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/affyGnf1m
UCSC track
Affy MOE430
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Affy MOE430'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyMOE430", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/affyMOE430_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/affyMOE430
UCSC track
CpG Islands
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/cpgIslandExt
UCSC track
REST
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'REST'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rest", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/rest_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/rest
UCSC track
Caltech Histone
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Caltech Histone'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeCaltechHist", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeCaltechHist_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeCaltechHist
UCSC track
Caltech TFBS
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Caltech TFBS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeCaltechTfbs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeCaltechTfbs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeCaltechTfbs
UCSC track
LICR Histone
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'LICR Histone'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeLicrHistone", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeLicrHistone_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeLicrHistone
UCSC track
NHGRI BiP
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'NHGRI BiP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeNhgriBip
UCSC track
PSU DNaseI HS
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'PSU DNaseI HS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodePsuDnase", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodePsuDnase_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodePsuDnase
UCSC track
PSU Histone
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'PSU Histone'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodePsuHistone", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodePsuHistone_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodePsuHistone
UCSC track
PSU TFBS
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'PSU TFBS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodePsuTfbs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodePsuTfbs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodePsuTfbs
UCSC track
Stan/Yale Histone
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Stan/Yale Histone'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeSydhHist", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeSydhHist_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeSydhHist
UCSC track
TS miRNA sites
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'TS miRNA sites'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("targetScanS", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/targetScanS_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/targetScanS
UCSC track
UW DNaseI DGF
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'UW DNaseI DGF'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeUwDgf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeUwDgf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeUwDgf
UCSC track
UW DNaseI HS
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'UW DNaseI HS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeUwDnase", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/wgEncodeUwDnase_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/wgEncodeUwDnase
UCSC track
GERP
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'GERP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allMm9RS_BW", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/allMm9RS_BW_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/allMm9RS_BW
UCSC track
Rat Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetRn4
UCSC track
Rabbit Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Rabbit Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOryCun2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetOryCun2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetOryCun2
UCSC track
Marmoset Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetCalJac3
UCSC track
Rhesus Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetRheMac2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetRheMac2
UCSC track
Chimp Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetPanTro3
UCSC track
Pig Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Pig Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetSusScr2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetSusScr2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetSusScr2
UCSC track
Human Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetHg19
UCSC track
Dog Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetCanFam2
UCSC track
Cat Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Cat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFelCat4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetFelCat4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetFelCat4
UCSC track
Horse Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetEquCab2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetEquCab2
UCSC track
Sheep Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Sheep Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOviAri1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetOviAri1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetOviAri1
UCSC track
Elephant Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Elephant Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetLoxAfr3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetLoxAfr3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetLoxAfr3
UCSC track
Opossum Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetMonDom5
UCSC track
Lizard Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Lizard Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAnoCar2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetAnoCar2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetAnoCar2
UCSC track
Chicken Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetGalGal3
UCSC track
Turkey Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Turkey Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMelGal1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetMelGal1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetMelGal1
UCSC track
Zebrafish Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetDanRer7
UCSC track
Medaka Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Medaka Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOryLat2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetOryLat2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetOryLat2
UCSC track
Stickleback Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Stickleback Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGasAcu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetGasAcu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetGasAcu1
UCSC track
Tetraodon Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Tetraodon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetTetNig2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetTetNig2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetTetNig2
UCSC track
Lamprey Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Lamprey Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPetMar1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetPetMar1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetPetMar1
UCSC track
Lancelet Chain/Net
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Lancelet Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBraFlo1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/chainNetBraFlo1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/chainNetBraFlo1
UCSC track
Agilent CGH
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Agilent CGH'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genotypeArrays", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/genotypeArrays_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/genotypeArrays
UCSC track
Segmental Dups
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/genomicSuperDups
UCSC track
RepeatMasker
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/rmsk
UCSC track
Microsatellite
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/microsat
UCSC track
NumtS Sequence
UCSC
Mus musculus
10090
mm9
GRanges object from UCSC track 'NumtS Sequence'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("numtSeq", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm9/database/numtSeq_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm9/database/numtSeq
UCSC track
Chromosome Band
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Chromosome Band'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/cytoBand
UCSC track
Assembly
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/gold
UCSC track
Gap
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/gap
UCSC track
MGI QTL
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'MGI QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/jaxQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/jaxQtl
UCSC track
CCDS
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'CCDS'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ccdsGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/ccdsGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/ccdsGene
UCSC track
RefSeq Genes
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/refGene
UCSC track
Other RefSeq
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/ensGene
UCSC track
SIB Genes
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'SIB Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sibGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/sibGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/sibGene
UCSC track
N-SCAN
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/nscanGene
UCSC track
SGP Genes
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'SGP Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sgpGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/sgpGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/sgpGene
UCSC track
Geneid Genes
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/geneid
UCSC track
Genscan Genes
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/genscan
UCSC track
miRNA
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("miRNA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/miRNA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/miRNA
UCSC track
Gene Trap
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Gene Trap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("igtc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/igtc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/igtc
UCSC track
Mouse mRNAs
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Mouse mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/mrna
UCSC track
Mouse ESTs
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Mouse ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/est
UCSC track
Other mRNAs
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/xenoMrna
UCSC track
SIB Alt-Splicing
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'SIB Alt-Splicing'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("sibTxGraph", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/sibTxGraph_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/sibTxGraph
UCSC track
MGI Phenotype
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'MGI Phenotype'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxPhenotype", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/jaxPhenotype_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/jaxPhenotype
UCSC track
MGI Allele
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'MGI Allele'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("jaxAllele", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/jaxAllele_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/jaxAllele
UCSC track
Rinn Sex Exp
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Rinn Sex Exp'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rinnSex", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/rinnSex_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/rinnSex
UCSC track
GNF U74A
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'GNF U74A'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnfU74A", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/affyGnfU74A_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/affyGnfU74A
UCSC track
Affy GNF1M
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Affy GNF1M'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1m", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/affyGnf1m_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/affyGnf1m
UCSC track
Affy U74
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Affy U74'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU74", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/affyU74_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/affyU74
UCSC track
Rhesus Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetRheMac2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetRheMac2
UCSC track
Dog Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetCanFam2
UCSC track
Cat Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Cat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFelCat3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetFelCat3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetFelCat3
UCSC track
Opossum Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetMonDom4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetMonDom4
UCSC track
Platypus Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetOrnAna1
UCSC track
Chicken Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetGalGal3
UCSC track
xenTro2 Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'xenTro2 Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetXenTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetXenTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetXenTro2
UCSC track
Zebrafish Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetDanRer4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetDanRer4
UCSC track
Fugu Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Fugu Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetFr1
UCSC track
Tetraodon Chain/Net
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Tetraodon Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/chainNetTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/chainNetTetNig1
UCSC track
SNPs (126)
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'SNPs (126)'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("snp126", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/snp126_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/snp126
UCSC track
RepeatMasker
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/rmsk
UCSC track
Simple Repeats
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/simpleRepeat
UCSC track
Microsatellite
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/microsat
UCSC track
STS Markers
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMapMouseNew", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/stsMapMouseNew_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/stsMapMouseNew
UCSC track
Map Contigs
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/ctgPos
UCSC track
Assembly
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/gold
UCSC track
BAC End Pairs
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/bacEndPairs
UCSC track
Known Genes
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Known Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/knownGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/knownGene
UCSC track
Other RefSeq
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/xenoRefGene
UCSC track
MGC Genes
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/mgcFullMrna
UCSC track
Ensembl Genes
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/ensGene
UCSC track
Geneid Genes
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/geneid
UCSC track
Genscan Genes
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/genscan
UCSC track
miRNA
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("miRNA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/miRNA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/miRNA
UCSC track
Mouse mRNAs
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Mouse mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/mrna
UCSC track
Spliced ESTs
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/intronEst
UCSC track
Riken CAGE TC
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Riken CAGE TC'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rikenCageTc", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/rikenCageTc_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/rikenCageTc
UCSC track
Allen Brain
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Allen Brain'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("allenBrainAli", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/allenBrainAli_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/allenBrainAli
UCSC track
Rinn Sex Exp
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Rinn Sex Exp'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rinnSex", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/rinnSex_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/rinnSex
UCSC track
GNF U74A
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'GNF U74A'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnfU74A", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/affyGnfU74A_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/affyGnfU74A
UCSC track
GNF U74B
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'GNF U74B'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnfU74B", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/affyGnfU74B_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/affyGnfU74B
UCSC track
Affy GNF1M
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Affy GNF1M'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyGnf1m", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/affyGnf1m_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/affyGnf1m
UCSC track
Affy U74
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Affy U74'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU74", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/affyU74_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/affyU74
UCSC track
Affy MOE430
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Affy MOE430'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyMOE430", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/affyMOE430_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/affyMOE430
UCSC track
PicTar miRNA
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'PicTar miRNA'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("picTar", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/picTar_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/picTar
UCSC track
Rat Chain/Net
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/chainNetRn3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/chainNetRn3
UCSC track
Human Chain/Net
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/chainNetHg18
UCSC track
Cow Chain/Net
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Cow Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBosTau2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/chainNetBosTau2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/chainNetBosTau2
UCSC track
X. tropicalis Chain/Net
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'X. tropicalis Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetXenTro1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/chainNetXenTro1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/chainNetXenTro1
UCSC track
Fugu Chain/Net
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Fugu Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/chainNetFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/chainNetFr1
UCSC track
RepeatMasker
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/rmsk
UCSC track
Microsatellite
UCSC
Mus musculus
10090
mm7
GRanges object from UCSC track 'Microsatellite'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("microsat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm7/database/microsat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm7/database/microsat
UCSC track
Gap
UCSC
Microcebus murinus
30608
micMur1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/micMur1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/micMur1/database/gap
UCSC track
Other RefSeq
UCSC
Microcebus murinus
30608
micMur1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/micMur1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/micMur1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Microcebus murinus
30608
micMur1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/micMur1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/micMur1/database/genscan
UCSC track
CpG Islands
UCSC
Microcebus murinus
30608
micMur1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/micMur1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/micMur1/database/cpgIslandExt
UCSC track
Marmoset Chain/Net
UCSC
Microcebus murinus
30608
micMur1
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/micMur1/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/micMur1/database/chainNetCalJac3
UCSC track
RepeatMasker
UCSC
Microcebus murinus
30608
micMur1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/micMur1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/micMur1/database/rmsk
UCSC track
Assembly
UCSC
Heterocephalus glaber
10181
hetGla2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla2/database/gold
UCSC track
Genscan Genes
UCSC
Heterocephalus glaber
10181
hetGla2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla2/database/genscan
UCSC track
CpG Islands
UCSC
Heterocephalus glaber
10181
hetGla2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla2/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Heterocephalus glaber
10181
hetGla2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla2/database/rmsk
UCSC track
WM + SDust
UCSC
Heterocephalus glaber
10181
hetGla2
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Heterocephalus glaber
10181
hetGla1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla1/database/gold
UCSC track
Genscan Genes
UCSC
Heterocephalus glaber
10181
hetGla1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla1/database/genscan
UCSC track
Other mRNAs
UCSC
Heterocephalus glaber
10181
hetGla1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla1/database/xenoMrna
UCSC track
Mouse Chain/Net
UCSC
Heterocephalus glaber
10181
hetGla1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Heterocephalus glaber
10181
hetGla1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Heterocephalus glaber
10181
hetGla1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hetGla1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hetGla1/database/simpleRepeat
UCSC track
Gap
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/gap
UCSC track
Other RefSeq
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/nscanGene
UCSC track
tRNA Genes
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/tRNAs
UCSC track
Opossum mRNAs
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Opossum mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/mrna
UCSC track
Opossum ESTs
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Opossum ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/est
UCSC track
CpG Islands
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/cpgIslandExt
UCSC track
Most Conserved
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements9way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/phastConsElements9way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/phastConsElements9way
UCSC track
Sheep Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Sheep Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOviAri1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetOviAri1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetOviAri1
UCSC track
Panda Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Panda Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAilMel1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetAilMel1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetAilMel1
UCSC track
White rhinoceros Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'White rhinoceros Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCerSim1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetCerSim1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetCerSim1
UCSC track
Cow Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Cow Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetBosTau7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetBosTau7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetBosTau7
UCSC track
Cat Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Cat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFelCat4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetFelCat4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetFelCat4
UCSC track
Marmoset Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetCalJac3
UCSC track
Orangutan Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetPonAbe2
UCSC track
Human Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetHg19
UCSC track
Chicken Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetGalGal3
UCSC track
X. tropicalis Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'X. tropicalis Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetXenTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetXenTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetXenTro3
UCSC track
Lamprey Chain/Net
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Lamprey Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPetMar2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/chainNetPetMar2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/chainNetPetMar2
UCSC track
Interrupted Rpts
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Monodelphis domestica
13616
monDom5
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom5/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom5/database/simpleRepeat
UCSC track
Gap
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/gap
UCSC track
Other RefSeq
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/nscanGene
UCSC track
Human Proteins
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/intronEst
UCSC track
Other mRNAs
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/xenoMrna
UCSC track
Guinea pig Chain/Net
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Guinea pig Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCavPor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/chainNetCavPor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/chainNetCavPor3
UCSC track
Mouse Chain/Net
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/chainNetMm9
UCSC track
Human Chain/Net
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/chainNetHg18
UCSC track
Chicken Chain/Net
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/chainNetGalGal3
UCSC track
Zebrafish Chain/Net
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/chainNetDanRer4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/chainNetDanRer4
UCSC track
Simple Repeats
UCSC
Monodelphis domestica
13616
monDom4
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom4/database/simpleRepeat
UCSC track
Gap
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/gap
UCSC track
Other RefSeq
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/xenoRefGene
UCSC track
Opossum mRNAs
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Opossum mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/mrna
UCSC track
CpG Islands
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/cpgIslandExt
UCSC track
Most Conserved
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mostConserved", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/mostConserved_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/mostConserved
UCSC track
Human Chain/Net
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg17", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/chainNetHg17_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/chainNetHg17
UCSC track
Simple Repeats
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/simpleRepeat
UCSC track
Assembly
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/gold
UCSC track
RefSeq Genes
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/refGene
UCSC track
Ensembl Genes
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/ensGene
UCSC track
Genscan Genes
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/genscan
UCSC track
Orangutan mRNAs
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Orangutan mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/mrna
UCSC track
Orangutan ESTs
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Orangutan ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/est
UCSC track
Gorilla Chain/Net
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Gorilla Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGorGor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/chainNetGorGor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/chainNetGorGor3
UCSC track
Human Chain/Net
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/chainNetHg19
UCSC track
Marmoset Chain/Net
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/chainNetCalJac3
UCSC track
Mouse Chain/Net
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/chainNetMm10
UCSC track
Platypus Chain/Net
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/chainNetOrnAna1
UCSC track
Interrupted Rpts
UCSC
Pongo abelii
9601
ponAbe2
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ponAbe2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ponAbe2/database/nestedRepeats
UCSC track
Assembly
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/gold
UCSC track
Ensembl Genes
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/ensGene
UCSC track
Human Proteins
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/blastHg18KG
UCSC track
Panda ESTs
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Panda ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/est
UCSC track
Opossum Chain/Net
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/chainNetMonDom5
UCSC track
Rat Chain/Net
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/chainNetRn4
UCSC track
Cat Chain/Net
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Cat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetFelCat4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/chainNetFelCat4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/chainNetFelCat4
UCSC track
RepeatMasker
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/rmsk
UCSC track
Simple Repeats
UCSC
Ailuropoda melanoleuca
9646
ailMel1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ailMel1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ailMel1/database/simpleRepeat
UCSC track
Gap
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/gap
UCSC track
RefSeq Genes
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/refGene
UCSC track
Ensembl Genes
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/ensGene
UCSC track
Pig mRNAs
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'Pig mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/mrna
UCSC track
Pig ESTs
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'Pig ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/est
UCSC track
CpG Islands
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/rmsk
UCSC track
WM + SDust
UCSC
Sus scrofa
9823
susScr3
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr3/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr3/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/gold
UCSC track
Gap
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/gap
UCSC track
Other RefSeq
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/nscanGene
UCSC track
Human Proteins
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/intronEst
UCSC track
Other mRNAs
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/xenoMrna
UCSC track
Mouse Chain/Net
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/chainNetMm9
UCSC track
Human Chain/Net
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/chainNetHg19
UCSC track
RepeatMasker
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/rmsk
UCSC track
Simple Repeats
UCSC
Sus scrofa
9823
susScr2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/susScr2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/susScr2/database/simpleRepeat
UCSC track
Gap
UCSC
Ochotona princeps
9978
ochPri2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ochPri2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ochPri2/database/gap
UCSC track
Other RefSeq
UCSC
Ochotona princeps
9978
ochPri2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ochPri2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ochPri2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Ochotona princeps
9978
ochPri2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ochPri2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ochPri2/database/genscan
UCSC track
CpG Islands
UCSC
Ochotona princeps
9978
ochPri2
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ochPri2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ochPri2/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Ochotona princeps
9978
ochPri2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ochPri2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ochPri2/database/rmsk
UCSC track
WM + SDust
UCSC
Ochotona princeps
9978
ochPri2
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ochPri2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ochPri2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/gold
UCSC track
WSSD Coverage
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'WSSD Coverage'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wssdCoverage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/wssdCoverage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/wssdCoverage
UCSC track
tRNA Genes
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/tRNAs
UCSC track
Platypus mRNAs
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Platypus mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/mrna
UCSC track
Platypus ESTs
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Platypus ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/est
UCSC track
Mouse Chain/Net
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/chainNetMm9
UCSC track
Interrupted Rpts
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/nestedRepeats
UCSC track
Assembly
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/gold
UCSC track
Gap
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/gap
UCSC track
Other RefSeq
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/xenoRefGene
UCSC track
tRNA Genes
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/tRNAs
UCSC track
Rabbit mRNAs
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Rabbit mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/mrna
UCSC track
Rabbit ESTs
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Rabbit ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/est
UCSC track
Mouse Chain/Net
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/chainNetMm9
UCSC track
RepeatMasker
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/rmsk
UCSC track
Simple Repeats
UCSC
Oryctolagus cuniculus
9986
oryCun2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryCun2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryCun2/database/simpleRepeat
UCSC track
Gap
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/gap
UCSC track
RefSeq Genes
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/refGene
UCSC track
MGC Genes
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'MGC Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/mgcFullMrna
UCSC track
Rat mRNAs
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'Rat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/mrna
UCSC track
Rat ESTs
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'Rat ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/est
UCSC track
CpG Islands
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/cpgIslandExt
UCSC track
Rhesus Chain/Net
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/chainNetRheMac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/chainNetRheMac3
UCSC track
Interrupted Rpts
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Rattus norvegicus
10116
rn5
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn5/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn5/database/simpleRepeat
UCSC track
STS Markers
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'STS Markers'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("stsMapRat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/stsMapRat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/stsMapRat
UCSC track
Gap
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/gap
UCSC track
BAC End Pairs
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/bacEndPairs
UCSC track
RGD QTL
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'RGD QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/rgdQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/rgdQtl
UCSC track
Old Known Genes
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Old Known Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("knownGenePrevious", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/knownGenePrevious_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/knownGenePrevious
UCSC track
Other RefSeq
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/ensGene
UCSC track
CONTRAST
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'CONTRAST'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("contrastGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/contrastGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/contrastGene
UCSC track
Geneid Genes
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/geneid
UCSC track
tRNA Genes
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/tRNAs
UCSC track
Rat mRNAs
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Rat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/mrna
UCSC track
Rat ESTs
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Rat ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/est
UCSC track
Affy RG-U34A
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Affy RG-U34A'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyU34A", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/affyU34A_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/affyU34A
UCSC track
CpG Islands
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/cpgIslandExt
UCSC track
NHGRI BiP
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'NHGRI BiP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/wgEncodeNhgriBip
UCSC track
Most Conserved
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements9way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/phastConsElements9way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/phastConsElements9way
UCSC track
Guinea pig Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Guinea pig Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCavPor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetCavPor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetCavPor3
UCSC track
panTro2 Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'panTro2 Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetPanTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetPanTro2
UCSC track
Panda Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Panda Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAilMel1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetAilMel1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetAilMel1
UCSC track
Horse Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetEquCab1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetEquCab1
UCSC track
Opossum Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetMonDom4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetMonDom4
UCSC track
Turkey Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Turkey Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMelGal1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetMelGal1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetMelGal1
UCSC track
Zebrafish Chain/Net
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/chainNetDanRer4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/chainNetDanRer4
UCSC track
Agilent CGH
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Agilent CGH'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genotypeArrays", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/genotypeArrays_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/genotypeArrays
UCSC track
Simple Repeats
UCSC
Rattus norvegicus
10116
rn4
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn4/database/simpleRepeat
UCSC track
Chromosome Band
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Chromosome Band'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/cytoBand
UCSC track
Recomb Rate
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Recomb Rate'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("recombRateRat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/recombRateRat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/recombRateRat
UCSC track
Gap
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/gap
UCSC track
BAC End Pairs
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'BAC End Pairs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/bacEndPairs
UCSC track
RGD QTL
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'RGD QTL'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdQtl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/rgdQtl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/rgdQtl
UCSC track
RefSeq Genes
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/refGene
UCSC track
RGD Genes
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'RGD Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/rgdGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/rgdGene
UCSC track
Ensembl Genes
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/ensGene
UCSC track
N-SCAN
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/nscanGene
UCSC track
Fgenesh++ Genes
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Fgenesh++ Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("softberryGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/softberryGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/softberryGene
UCSC track
Genscan Genes
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/genscan
UCSC track
Rat mRNAs
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Rat mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/mrna
UCSC track
Rat ESTs
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Rat ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/est
UCSC track
Other mRNAs
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/xenoMrna
UCSC track
GNF Atlas 2
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'GNF Atlas 2'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gnfAtlas2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/gnfAtlas2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/gnfAtlas2
UCSC track
Affy RAE230
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Affy RAE230'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("affyRAE230", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/affyRAE230_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/affyRAE230
UCSC track
Fugu Ecores
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Fugu Ecores'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ecoresFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/ecoresFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/ecoresFr1
UCSC track
Dog Chain/Net
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/chainNetCanFam2
UCSC track
RGD SSLP
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'RGD SSLP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rgdSslp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/rgdSslp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/rgdSslp
UCSC track
RepeatMasker
UCSC
Rattus norvegicus
10116
rn3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rn3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rn3/database/rmsk
UCSC track
Assembly
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/gold
UCSC track
Gap
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/gap
UCSC track
RefSeq Genes
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/refGene
UCSC track
Genscan Genes
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/genscan
UCSC track
Spliced ESTs
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/intronEst
UCSC track
Other mRNAs
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/xenoMrna
UCSC track
Orangutan Chain/Net
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/chainNetPonAbe2
UCSC track
Chimp Chain/Net
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Chimp Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPanTro4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/chainNetPanTro4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/chainNetPanTro4
UCSC track
Marmoset Chain/Net
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/chainNetCalJac3
UCSC track
Mouse Chain/Net
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Macaca mulatta
9544
rheMac3
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac3/database/rmsk
UCSC track
Contigs
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/ctgPos
UCSC track
Gap
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/gap
UCSC track
RefSeq Genes
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/refGene
UCSC track
Other RefSeq
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/nscanGene
UCSC track
Geneid Genes
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Geneid Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/geneid
UCSC track
Rhesus mRNAs
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Rhesus mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/mrna
UCSC track
Rhesus ESTs
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Rhesus ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/est
UCSC track
NHGRI BiP
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'NHGRI BiP'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeNhgriBip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/wgEncodeNhgriBip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/wgEncodeNhgriBip
UCSC track
Gorilla Chain/Net
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Gorilla Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGorGor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/chainNetGorGor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/chainNetGorGor3
UCSC track
Human Chain/Net
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/chainNetHg19
UCSC track
rn4 Chain/Net
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'rn4 Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/chainNetRn4
UCSC track
RepeatMasker
UCSC
Macaca mulatta
9544
rheMac2
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/rheMac2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/rheMac2/database/rmsk
UCSC track
Assembly
UCSC
Procavia capensis
9813
proCap1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/proCap1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/proCap1/database/gold
UCSC track
Ensembl Assembly
UCSC
Procavia capensis
9813
proCap1
GRanges object from UCSC track 'Ensembl Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/proCap1/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/proCap1/database/ensemblGeneScaffold
UCSC track
Ensembl Genes
UCSC
Procavia capensis
9813
proCap1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/proCap1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/proCap1/database/ensGene
UCSC track
CpG Islands
UCSC
Procavia capensis
9813
proCap1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/proCap1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/proCap1/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Procavia capensis
9813
proCap1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/proCap1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/proCap1/database/rmsk
UCSC track
WM + SDust
UCSC
Procavia capensis
9813
proCap1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/proCap1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/proCap1/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/gold
UCSC track
Gap
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/gap
UCSC track
RefSeq Genes
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'RefSeq Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/refGene
UCSC track
tRNA Genes
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'tRNA Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/tRNAs
UCSC track
Spliced ESTs
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/intronEst
UCSC track
Other mRNAs
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Other mRNAs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/xenoMrna
UCSC track
Mouse Chain/Net
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/chainNetMm9
UCSC track
Opossum Chain/Net
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/chainNetMonDom5
UCSC track
Interrupted Rpts
UCSC
Ovis aries
9940
oviAri1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oviAri1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oviAri1/database/nestedRepeats
UCSC track
Assembly
UCSC
Sorex araneus
42254
sorAra1
GRanges object from UCSC track 'Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/gold
UCSC track
Ensembl Assembly
UCSC
Sorex araneus
42254
sorAra1
GRanges object from UCSC track 'Ensembl Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/ensemblGeneScaffold
UCSC track
Ensembl Genes
UCSC
Sorex araneus
42254
sorAra1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/ensGene
UCSC track
Mouse Chain/Net
UCSC
Sorex araneus
42254
sorAra1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Sorex araneus
42254
sorAra1
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Sorex araneus
42254
sorAra1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/simpleRepeat
UCSC track
Gap
UCSC
Homo sapiens
9606
hg19
GRanges object from UCSC track 'Gap'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg19/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/gap
UCSC track
Affy RNA Loc
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Affy RNA Loc'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wgEncodeAffyRnaChip", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/wgEncodeAffyRnaChip_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/wgEncodeAffyRnaChip
UCSC track
Burge RNA-seq
UCSC
Homo sapiens
9606
hg18
GRanges object from UCSC track 'Burge RNA-seq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("burgeRnaSeqGemMapperAlign", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/hg18/database/burgeRnaSeqGemMapperAlign_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/hg18/database/burgeRnaSeqGemMapperAlign
UCSC track
Gorilla Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Gorilla Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGorGor3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetGorGor3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetGorGor3
UCSC track
Orangutan Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetPonAbe2
UCSC track
Horse Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetEquCab2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetEquCab2
UCSC track
Rhesus Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Rhesus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRheMac2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetRheMac2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetRheMac2
UCSC track
Marmoset Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Marmoset Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCalJac3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetCalJac3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetCalJac3
UCSC track
Dog Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetCanFam2
UCSC track
Opossum Chain/Net
UCSC
Pan troglodytes
9598
panTro3
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro3/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro3/database/chainNetMonDom5
UCSC track
Simple Repeats
UCSC
Pan troglodytes
9598
panTro1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/panTro1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/panTro1/database/simpleRepeat
UCSC track
Other RefSeq
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/xenoRefGene
UCSC track
Dog Chain/Net
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Dog Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetCanFam2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/chainNetCanFam2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/chainNetCanFam2
UCSC track
Opossum Chain/Net
UCSC
Bos taurus
9913
bosTau7
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau7/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau7/database/chainNetMonDom5
UCSC track
Human Chain/Net
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/chainNetHg19
UCSC track
Platypus Chain/Net
UCSC
Bos taurus
9913
bosTau4
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/bosTau4/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/bosTau4/database/chainNetOrnAna1
UCSC track
Simple Repeats
UCSC
Canis familiaris
9615
canFam3
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam3/database/simpleRepeat
UCSC track
Other RefSeq
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/genscan
UCSC track
Human Proteins
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/blastHg18KG
UCSC track
Most Conserved
UCSC
Canis familiaris
9615
canFam2
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements4way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/canFam2/database/phastConsElements4way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/canFam2/database/phastConsElements4way
UCSC track
Interrupted Rpts
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/nestedRepeats
UCSC track
WM + SDust
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Tursiops truncatus
9739
turTru2
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/turTru2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/turTru2/database/simpleRepeat
UCSC track
Other RefSeq
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/xenoRefGene
UCSC track
Human Chain/Net
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/chainNetHg19
UCSC track
Interrupted Rpts
UCSC
Loxodonta africana
9785
loxAfr3
GRanges object from UCSC track 'Interrupted Rpts'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/loxAfr3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/loxAfr3/database/nestedRepeats
UCSC track
Other RefSeq
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/xenoRefGene
UCSC track
Ensembl Genes
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/ensGene
UCSC track
N-SCAN
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'N-SCAN'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/nscanGene
UCSC track
Genscan Genes
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/genscan
UCSC track
Human Proteins
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Human Proteins'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Spliced ESTs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/intronEst
UCSC track
CpG Islands
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/cpgIslandExt
UCSC track
Rat Chain/Net
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Rat Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/chainNetRn4
UCSC track
Mouse Chain/Net
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/chainNetMm9
UCSC track
Rabbit Chain/Net
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Rabbit Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOryCun2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/chainNetOryCun2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/chainNetOryCun2
UCSC track
Opossum Chain/Net
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Opossum Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMonDom4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/chainNetMonDom4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/chainNetMonDom4
UCSC track
Chicken Chain/Net
UCSC
Cavia porcellus
10141
cavPor3
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cavPor3/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cavPor3/database/chainNetGalGal3
UCSC track
Chicken Chain/Net
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Chicken Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/chainNetGalGal3
UCSC track
RepeatMasker
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'RepeatMasker'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/rmsk
UCSC track
WM + SDust
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/windowmaskerSdust
UCSC track
Simple Repeats
UCSC
Equus caballus
9796
equCab1
GRanges object from UCSC track 'Simple Repeats'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/equCab1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/equCab1/database/simpleRepeat
UCSC track
Ensembl Assembly
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Ensembl Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/ensemblGeneScaffold
UCSC track
Ensembl Genes
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Ensembl Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/ensGene
UCSC track
Genscan Genes
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Genscan Genes'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/genscan
UCSC track
CpG Islands
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/chainNetMm10
UCSC track
WM + SDust
UCSC
Dipodomys ordii
10020
dipOrd1
GRanges object from UCSC track 'WM + SDust'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dipOrd1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dipOrd1/database/windowmaskerSdust
UCSC track
Human Chain/Net
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Human Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/chainNetHg19
UCSC track
Mouse Chain/Net
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Mouse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/chainNetMm9
UCSC track
Platypus Chain/Net
UCSC
Callithrix jacchus
9483
calJac1
GRanges object from UCSC track 'Platypus Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/calJac1/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/calJac1/database/chainNetOrnAna1
UCSC track
Ensembl Assembly
UCSC
Pteropus vampyrus
132908
pteVam1
GRanges object from UCSC track 'Ensembl Assembly'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/pteVam1/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/pteVam1/database/ensemblGeneScaffold
UCSC track
Map Contigs
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'Map Contigs'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("ctgPos", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/ctgPos_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/ctgPos
UCSC track
WSSD Coverage
UCSC
Mus musculus
10090
mm8
GRanges object from UCSC track 'WSSD Coverage'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("wssdCoverage", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/mm8/database/wssdCoverage_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/mm8/database/wssdCoverage
UCSC track
Zebrafish Chain/Net
UCSC
Monodelphis domestica
13616
monDom1
GRanges object from UCSC track 'Zebrafish Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetDanRer2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/monDom1/database/chainNetDanRer2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/monDom1/database/chainNetDanRer2
UCSC track
Other RefSeq
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Other RefSeq'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/xenoRefGene
UCSC track
CpG Islands
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'CpG Islands'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/cpgIslandExt
UCSC track
Most Conserved
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Most Conserved'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("phastConsElements6way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/phastConsElements6way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/phastConsElements6way
UCSC track
Horse Chain/Net
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Horse Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetEquCab2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/chainNetEquCab2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/chainNetEquCab2
UCSC track
Orangutan Chain/Net
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Orangutan Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetPonAbe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/chainNetPonAbe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/chainNetPonAbe2
UCSC track
Lizard Chain/Net
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Lizard Chain/Net'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("chainNetAnoCar2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/chainNetAnoCar2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/chainNetAnoCar2
UCSC track
Segmental Dups
UCSC
Ornithorhynchus anatinus
9258
ornAna1
GRanges object from UCSC track 'Segmental Dups'
1
Marc Carlson <mcarlson@fhcrc.org>
2013-03-26
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ornAna1/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ornAna1/database/genomicSuperDups
UCSC track
Chicken Chain/Net
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/chainNetGalGal3
UCSC track
Interrupted Rpts
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/simpleRepeat
UCSC track
Gap
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/gap
UCSC track
Lizard mRNAs
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜Lizard mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/mrna
UCSC track
Lizard ESTs
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜Lizard ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/est
UCSC track
CpG Islands
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/cpgIslandExt
UCSC track
Chicken Chain/Net
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/chainNetGalGal3
UCSC track
Mouse Chain/Net
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/chainNetMm9
UCSC track
X. tropicalis Chain/Net
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜X. tropicalis Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetXenTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/chainNetXenTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/chainNetXenTro3
UCSC track
RepeatMasker
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/rmsk
UCSC track
WM + SDust
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/gold
UCSC track
Other RefSeq
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/genscan
UCSC track
Lizard mRNAs
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Lizard mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/mrna
UCSC track
Chicken Chain/Net
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/chainNetGalGal3
UCSC track
Mouse Chain/Net
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/chainNetMm9
UCSC track
xenTro2 Chain/Net
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜xenTro2 Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetXenTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/chainNetXenTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/chainNetXenTro2
UCSC track
RepeatMasker
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/rmsk
UCSC track
Simple Repeats
UCSC
Anolis carolinensis
28377
anoCar1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar1/database/simpleRepeat
UCSC track
Scaffolds
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/ctgPos2
UCSC track
Publications
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Publicationsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("pubs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/pubs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/pubs
UCSC track
Other RefSeq
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/xenoRefGene
UCSC track
tRNA Genes
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/tRNAs
UCSC track
Medaka mRNAs
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Medaka mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/mrna
UCSC track
Medaka ESTs
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Medaka ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/est
UCSC track
Fugu Chain/Net
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Fugu Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetFr3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/chainNetFr3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/chainNetFr3
UCSC track
Tetraodon Chain/Net
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Tetraodon Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTetNig2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/chainNetTetNig2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/chainNetTetNig2
UCSC track
Mouse Chain/Net
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/chainNetMm9
UCSC track
Lamprey Chain/Net
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Lamprey Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetPetMar2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/chainNetPetMar2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/chainNetPetMar2
UCSC track
Interrupted Rpts
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Oryzias latipes
8090
oryLat2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oryLat2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oryLat2/database/simpleRepeat
UCSC track
Assembly
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/gold
UCSC track
Genscan Genes
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/genscan
UCSC track
CpG Islands
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/cpgIslandExt
UCSC track
Zebra finch Chain/Net
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜Zebra finch Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTaeGut1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/chainNetTaeGut1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/chainNetTaeGut1
UCSC track
Turkey Chain/Net
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜Turkey Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMelGal1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/chainNetMelGal1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/chainNetMelGal1
UCSC track
Mouse Chain/Net
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/chainNetMm10
UCSC track
RepeatMasker
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/rmsk
UCSC track
WM + SDust
UCSC
Geospiza fortis
48883
geoFor1
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/geoFor1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/geoFor1/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Oreochromis niloticus
8128
oreNil2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oreNil2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oreNil2/database/gold
UCSC track
Genscan Genes
UCSC
Oreochromis niloticus
8128
oreNil2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oreNil2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oreNil2/database/genscan
UCSC track
Spliced ESTs
UCSC
Oreochromis niloticus
8128
oreNil2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oreNil2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oreNil2/database/intronEst
UCSC track
CpG Islands
UCSC
Oreochromis niloticus
8128
oreNil2
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oreNil2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oreNil2/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Oreochromis niloticus
8128
oreNil2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oreNil2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oreNil2/database/rmsk
UCSC track
WM + SDust
UCSC
Oreochromis niloticus
8128
oreNil2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/oreNil2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/oreNil2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Chrysemys picta
8479
chrPic1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/chrPic1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/chrPic1/database/gold
UCSC track
Genscan Genes
UCSC
Chrysemys picta
8479
chrPic1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/chrPic1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/chrPic1/database/genscan
UCSC track
Mouse Chain/Net
UCSC
Chrysemys picta
8479
chrPic1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/chrPic1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/chrPic1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Chrysemys picta
8479
chrPic1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/chrPic1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/chrPic1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Chrysemys picta
8479
chrPic1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/chrPic1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/chrPic1/database/simpleRepeat
UCSC track
Gap
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/gap
UCSC track
Other RefSeq
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜N-SCANâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/nscanGene
UCSC track
Human Proteins
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/intronEst
UCSC track
Most Conserved
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements8way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/phastConsElements8way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/phastConsElements8way
UCSC track
Medaka Chain/Net
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Medaka Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetOryLat2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/chainNetOryLat2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/chainNetOryLat2
UCSC track
Zebrafish Chain/Net
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/chainNetDanRer7
UCSC track
Chicken Chain/Net
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/chainNetGalGal3
UCSC track
Human Chain/Net
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/chainNetHg19
UCSC track
WM + SDust
UCSC
Gasterosteus aculeatus
69293
gasAcu1
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/gasAcu1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/gasAcu1/database/windowmaskerSdust
UCSC track
Scaffolds
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/gold
UCSC track
Ensembl Genes
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/ensGene
UCSC track
tRNA Genes
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/tRNAs
UCSC track
Tetraodon mRNAs
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜Tetraodon mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/mrna
UCSC track
CpG Islands
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/cpgIslandExt
UCSC track
Medaka Chain/Net
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜Medaka Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetOryLat2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/chainNetOryLat2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/chainNetOryLat2
UCSC track
Zebrafish Chain/Net
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/chainNetDanRer7
UCSC track
Human Chain/Net
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/chainNetHg19
UCSC track
WM + SDust
UCSC
Tetraodon nigroviridis
99883
tetNig2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig2/database/windowmaskerSdust
UCSC track
Scaffolds
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/gold
UCSC track
Ensembl Genes
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/ensGene
UCSC track
Genoscope GAZE
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Genoscope GAZEâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gaze", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/gaze_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/gaze
UCSC track
Genscan Genes
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/genscan
UCSC track
Human Proteins
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/blastHg18KG
UCSC track
Fugu Chain/Net
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Fugu Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetFr2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/chainNetFr2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/chainNetFr2
UCSC track
Stickleback Chain/Net
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Stickleback Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGasAcu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/chainNetGasAcu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/chainNetGasAcu1
UCSC track
Mouse Chain/Net
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/chainNetMm9
UCSC track
Self Chain
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜Self Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/chainSelf
UCSC track
RepeatMasker
UCSC
Tetraodon nigroviridis
99883
tetNig1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tetNig1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tetNig1/database/rmsk
UCSC track
Assembly
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/gold
UCSC track
Gap
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/gap
UCSC track
Other RefSeq
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜N-SCANâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/nscanGene
UCSC track
Human Proteins
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/intronEst
UCSC track
Other mRNAs
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/xenoMrna
UCSC track
Chicken Chain/Net
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/chainNetGalGal3
UCSC track
Medium ground finch Chain/Net
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Medium ground finch Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGeoFor1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/chainNetGeoFor1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/chainNetGeoFor1
UCSC track
Rat Chain/Net
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Rat Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/chainNetRn4
UCSC track
Human Chain/Net
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/chainNetHg19
UCSC track
Zebrafish Chain/Net
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/chainNetDanRer7
UCSC track
Interrupted Rpts
UCSC
Meleagris gallopavo
9103
melGal1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melGal1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melGal1/database/nestedRepeats
UCSC track
Assembly
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/gold
UCSC track
Gap
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/gap
UCSC track
RefSeq Genes
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/refGene
UCSC track
Ensembl Genes
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/ensGene
UCSC track
tRNA Genes
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/tRNAs
UCSC track
X. tropicalis mRNAs
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜X. tropicalis mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/mrna
UCSC track
X. tropicalis ESTs
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜X. tropicalis ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/est
UCSC track
Chicken Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/chainNetGalGal3
UCSC track
Opossum Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Opossum Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/chainNetMonDom5
UCSC track
Mouse Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/chainNetMm9
UCSC track
Zebrafish Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/chainNetDanRer7
UCSC track
Interrupted Rpts
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Xenopus tropicalis
8364
xenTro3
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro3/database/simpleRepeat
UCSC track
Assembly
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/gold
UCSC track
Publications
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Publicationsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("pubs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/pubs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/pubs
UCSC track
RefSeq Genes
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/refGene
UCSC track
XGC Genes
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜XGC Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/mgcFullMrna
UCSC track
Genscan Genes
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/genscan
UCSC track
X. tropicalis mRNAs
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜X. tropicalis mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/mrna
UCSC track
X. tropicalis ESTs
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜X. tropicalis ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/est
UCSC track
Lizard Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Lizard Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetAnoCar2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/chainNetAnoCar2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/chainNetAnoCar2
UCSC track
monDom4 Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜monDom4 Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMonDom4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/chainNetMonDom4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/chainNetMonDom4
UCSC track
Mouse Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/chainNetMm9
UCSC track
Zebrafish Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/chainNetDanRer7
UCSC track
Simple Repeats
UCSC
Xenopus tropicalis
8364
xenTro2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro2/database/simpleRepeat
UCSC track
Assembly
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/gold
UCSC track
JGI Genes
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜JGI Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("jgiFilteredModels", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/jgiFilteredModels_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/jgiFilteredModels
UCSC track
Human Proteins
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg17KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/blastHg17KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/blastHg17KG
UCSC track
X. tropicalis mRNAs
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜X. tropicalis mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/mrna
UCSC track
X. tropicalis ESTs
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜X. tropicalis ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/est
UCSC track
Fugu Blat
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜Fugu Blatâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blatFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/blatFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/blatFr1
UCSC track
Mouse Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm8", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/chainNetMm8_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/chainNetMm8
UCSC track
Zebrafish Chain/Net
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/chainNetDanRer1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/chainNetDanRer1
UCSC track
Simple Repeats
UCSC
Xenopus tropicalis
8364
xenTro1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/xenTro1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/xenTro1/database/simpleRepeat
UCSC track
Gap
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/gap
UCSC track
Other RefSeq
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/xenoRefGene
UCSC track
N-SCAN
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜N-SCANâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/nscanGene
UCSC track
tRNA Genes
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/tRNAs
UCSC track
Zebra finch mRNAs
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Zebra finch mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/mrna
UCSC track
Zebra finch ESTs
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Zebra finch ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/est
UCSC track
Medium ground finch Chain/Net
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Medium ground finch Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGeoFor1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/chainNetGeoFor1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/chainNetGeoFor1
UCSC track
Turkey Chain/Net
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Turkey Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMelGal1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/chainNetMelGal1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/chainNetMelGal1
UCSC track
RepeatMasker
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/rmsk
UCSC track
Simple Repeats
UCSC
Taeniopygia guttata
59729
taeGut1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/taeGut1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/taeGut1/database/simpleRepeat
UCSC track
Contigs
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜Contigsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/ctgPos2
UCSC track
RefSeq Genes
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/refGene
UCSC track
ZGC Genes
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜ZGC Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/mgcFullMrna
UCSC track
tRNA Genes
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/tRNAs
UCSC track
Zebrafish mRNAs
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜Zebrafish mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/mrna
UCSC track
Zebrafish ESTs
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜Zebrafish ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/est
UCSC track
CpG Islands
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/cpgIslandExt
UCSC track
X. tropicalis Chain/Net
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜X. tropicalis Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetXenTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/chainNetXenTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/chainNetXenTro3
UCSC track
Vertebrate Chain/Net
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜Vertebrate Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("vertebrateChainNet", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/vertebrateChainNet_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/vertebrateChainNet
UCSC track
Chimp Chain/Net
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜Chimp Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/chainNetPanTro3
UCSC track
Interrupted Rpts
UCSC
Danio rerio
7955
danRer7
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer7/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer7/database/nestedRepeats
UCSC track
Assembly
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/gold
UCSC track
Publications
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Publicationsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("pubs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/pubs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/pubs
UCSC track
RefSeq Genes
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/refGene
UCSC track
ZGC Genes
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜ZGC Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/mgcFullMrna
UCSC track
tRNA Genes
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/tRNAs
UCSC track
Zebrafish mRNAs
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Zebrafish mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/mrna
UCSC track
Zebrafish ESTs
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Zebrafish ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/est
UCSC track
CpG Islands
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/cpgIslandExt
UCSC track
Most Conserved
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements6way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/phastConsElements6way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/phastConsElements6way
UCSC track
Stickleback Chain/Net
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Stickleback Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGasAcu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/chainNetGasAcu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/chainNetGasAcu1
UCSC track
Interrupted Rpts
UCSC
Danio rerio
7955
danRer6
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer6/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer6/database/nestedRepeats
UCSC track
Contigs
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Contigsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/ctgPos2
UCSC track
RefSeq Genes
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/refGene
UCSC track
ZGC Genes
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜ZGC Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/mgcFullMrna
UCSC track
Vega Pseudogenes
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Vega Pseudogenesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("vegaPseudoGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/vegaPseudoGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/vegaPseudoGene
UCSC track
Human Proteins
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/intronEst
UCSC track
Affy Zebrafish
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Affy Zebrafishâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("affyZebrafish", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/affyZebrafish_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/affyZebrafish
UCSC track
Medaka Chain/Net
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Medaka Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetOryLat2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/chainNetOryLat2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/chainNetOryLat2
UCSC track
Tetraodon Chain/Net
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Tetraodon Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/chainNetTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/chainNetTetNig1
UCSC track
Mouse Chain/Net
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/chainNetMm9
UCSC track
RepeatMasker
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/rmsk
UCSC track
Simple Repeats
UCSC
Danio rerio
7955
danRer5
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer5/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer5/database/simpleRepeat
UCSC track
Contigs
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Contigsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/ctgPos2
UCSC track
Radiation Hybrid
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Radiation Hybridâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rhMap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/rhMap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/rhMap
UCSC track
BAC End Singles
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜BAC End Singlesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bacEndSingles", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/bacEndSingles_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/bacEndSingles
UCSC track
Ensembl Genes
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/ensGene
UCSC track
Other RefSeq
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/xenoRefGene
UCSC track
Vega Genes
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Vega Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("vegaGeneZfish", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/vegaGeneZfish_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/vegaGeneZfish
UCSC track
CONTRAST
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜CONTRASTâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("contrastGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/contrastGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/contrastGene
UCSC track
Human Proteins
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/intronEst
UCSC track
Affy Zebrafish
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Affy Zebrafishâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("affyZebrafish", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/affyZebrafish_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/affyZebrafish
UCSC track
Most Conserved
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/phastConsElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/phastConsElements
UCSC track
Fugu Chain/Net
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Fugu Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetFr2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/chainNetFr2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/chainNetFr2
UCSC track
xenTro2 Chain/Net
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜xenTro2 Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetXenTro2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/chainNetXenTro2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/chainNetXenTro2
UCSC track
Opossum Chain/Net
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Opossum Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMonDom4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/chainNetMonDom4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/chainNetMonDom4
UCSC track
Mouse Chain/Net
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm8", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/chainNetMm8_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/chainNetMm8
UCSC track
Human Chain/Net
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/chainNetHg18
UCSC track
Simple Repeats
UCSC
Danio rerio
7955
danRer4
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer4/database/simpleRepeat
UCSC track
Scaffolds
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/gold
UCSC track
Gap
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/gap
UCSC track
BAC End Pairs
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜BAC End Pairsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/bacEndPairs
UCSC track
RefSeq Genes
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/refGene
UCSC track
ZGC Genes
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜ZGC Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mgcFullMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/mgcFullMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/mgcFullMrna
UCSC track
Zebrafish mRNAs
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Zebrafish mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/mrna
UCSC track
Zebrafish ESTs
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Zebrafish ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/est
UCSC track
TIGR Gene Index
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜TIGR Gene Indexâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tigrGeneIndex", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/tigrGeneIndex_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/tigrGeneIndex
UCSC track
Affy Zebrafish
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Affy Zebrafishâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("affyZebrafish", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/affyZebrafish_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/affyZebrafish
UCSC track
Most Conserved
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/phastConsElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/phastConsElements
UCSC track
Tetraodon Chain/Net
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Tetraodon Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTetNig1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/chainNetTetNig1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/chainNetTetNig1
UCSC track
Human Chain/Net
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/chainNetHg18
UCSC track
Simple Repeats
UCSC
Danio rerio
7955
danRer3
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/danRer3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/danRer3/database/simpleRepeat
UCSC track
Gap
UCSC
Ciona intestinalis
7719
ci2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci2/database/gap
UCSC track
Other RefSeq
UCSC
Ciona intestinalis
7719
ci2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci2/database/xenoRefGene
UCSC track
C. intestinalis mRNAs
UCSC
Ciona intestinalis
7719
ci2
GRanges object from on UCSC track â€˜C. intestinalis mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci2/database/mrna
UCSC track
C. intestinalis ESTs
UCSC
Ciona intestinalis
7719
ci2
GRanges object from on UCSC track â€˜C. intestinalis ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci2/database/est
UCSC track
RepeatMasker
UCSC
Ciona intestinalis
7719
ci2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci2/database/rmsk
UCSC track
Gap
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/gap
UCSC track
RefSeq Genes
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/refGene
UCSC track
JGI Genes
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜JGI Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("jgiGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/jgiGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/jgiGene
UCSC track
Human Proteins
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg16KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/blastHg16KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/blastHg16KG
UCSC track
Spliced ESTs
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/intronEst
UCSC track
Other mRNAs
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/xenoMrna
UCSC track
RepeatMasker
UCSC
Ciona intestinalis
7719
ci1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ci1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ci1/database/rmsk
UCSC track
Scaffolds
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/gold
UCSC track
Human Proteins
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/intronEst
UCSC track
Other mRNAs
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/xenoMrna
UCSC track
Most Conserved
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements5way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/phastConsElements5way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/phastConsElements5way
UCSC track
Human Chain/Net
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/chainNetHg18
UCSC track
Mouse Chain/Net
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm9", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/chainNetMm9_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/chainNetMm9
UCSC track
Simple Repeats
UCSC
Branchiostoma floridae
7739
braFlo1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/braFlo1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/braFlo1/database/simpleRepeat
UCSC track
Gap
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/gap
UCSC track
Other RefSeq
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/xenoRefGene
UCSC track
Human Proteins
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/intronEst
UCSC track
Other mRNAs
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/xenoMrna
UCSC track
C. intestinalis Net
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜C. intestinalis Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netCi2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/netCi2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/netCi2
UCSC track
RepeatMasker
UCSC
Strongylocentrotus purpuratus
7668
strPur2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur2/database/rmsk
UCSC track
Assembly
UCSC
Strongylocentrotus purpuratus
7668
strPur1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur1/database/gold
UCSC track
RefSeq Genes
UCSC
Strongylocentrotus purpuratus
7668
strPur1
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur1/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur1/database/refGene
UCSC track
Genscan Genes
UCSC
Strongylocentrotus purpuratus
7668
strPur1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur1/database/genscan
UCSC track
S. purpuratus mRNAs
UCSC
Strongylocentrotus purpuratus
7668
strPur1
GRanges object from on UCSC track â€˜S. purpuratus mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur1/database/mrna
UCSC track
Human Chain/Net
UCSC
Strongylocentrotus purpuratus
7668
strPur1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur1/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur1/database/chainNetHg18
UCSC track
Simple Repeats
UCSC
Strongylocentrotus purpuratus
7668
strPur1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/strPur1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/strPur1/database/simpleRepeat
UCSC track
NCBI Genes
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜NCBI Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("modelRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/modelRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/modelRefGene
UCSC track
Homologs (EMBL)
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜Homologs (EMBL)â€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("brhInparalog", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/brhInparalog_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/brhInparalog
UCSC track
Genscan Genes
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/genscan
UCSC track
Human  Proteins
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜Human  Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg17KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/blastHg17KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/blastHg17KG
UCSC track
Spliced ESTs
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/intronEst
UCSC track
Other mRNAs
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/netDm2
UCSC track
Simple Repeats
UCSC
Apis mellifera
7460
apiMel2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel2/database/simpleRepeat
UCSC track
Gap
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/gap
UCSC track
Other RefSeq
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/xenoRefGene
UCSC track
D. mel. Proteins
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm1FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/blastDm1FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/blastDm1FB
UCSC track
Spliced ESTs
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/intronEst
UCSC track
Other mRNAs
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/netDm2
UCSC track
Simple Repeats
UCSC
Apis mellifera
7460
apiMel1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/apiMel1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/apiMel1/database/simpleRepeat
UCSC track
Gap
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/gap
UCSC track
Other RefSeq
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/xenoRefGene
UCSC track
Geneid Genes
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜Geneid Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/geneid
UCSC track
D. mel. Proteins
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/blastDm2FB
UCSC track
Spliced ESTs
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/intronEst
UCSC track
Other mRNAs
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/xenoMrna
UCSC track
AnoEST Non-Unique
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜AnoEST Non-Uniqueâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("anoEstNcl", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/anoEstNcl_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/anoEstNcl
UCSC track
D. mel. Net
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/netDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/netDm3
UCSC track
Simple Repeats
UCSC
Anopheles gambiae
7165
anoGam1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoGam1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoGam1/database/simpleRepeat
UCSC track
Gap
UCSC
Drosophila ananassae
7217
droAna2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna2/database/gap
UCSC track
Other RefSeq
UCSC
Drosophila ananassae
7217
droAna2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Drosophila ananassae
7217
droAna2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna2/database/genscan
UCSC track
D. anan. mRNAs
UCSC
Drosophila ananassae
7217
droAna2
GRanges object from on UCSC track â€˜D. anan. mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna2/database/mrna
UCSC track
D. mel. Chain
UCSC
Drosophila ananassae
7217
droAna2
GRanges object from on UCSC track â€˜D. mel. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna2/database/chainDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna2/database/chainDm3
UCSC track
RepeatMasker
UCSC
Drosophila ananassae
7217
droAna2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna2/database/rmsk
UCSC track
Gap
UCSC
Drosophila ananassae
7217
droAna1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna1/database/gap
UCSC track
Other RefSeq
UCSC
Drosophila ananassae
7217
droAna1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Drosophila ananassae
7217
droAna1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna1/database/genscan
UCSC track
D. anan. mRNAs
UCSC
Drosophila ananassae
7217
droAna1
GRanges object from on UCSC track â€˜D. anan. mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna1/database/mrna
UCSC track
D. mel. Chain
UCSC
Drosophila ananassae
7217
droAna1
GRanges object from on UCSC track â€˜D. mel. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna1/database/chainDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna1/database/chainDm2
UCSC track
RepeatMasker
UCSC
Drosophila ananassae
7217
droAna1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droAna1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droAna1/database/rmsk
UCSC track
Assembly
UCSC
Drosophila erecta
7220
droEre1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droEre1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droEre1/database/gold
UCSC track
GeneMapper
UCSC
Drosophila erecta
7220
droEre1
GRanges object from on UCSC track â€˜GeneMapperâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneMapper", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droEre1/database/geneMapper_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droEre1/database/geneMapper
UCSC track
D. mel. Proteins
UCSC
Drosophila erecta
7220
droEre1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droEre1/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droEre1/database/blastDm2FB
UCSC track
D. mel. Chain
UCSC
Drosophila erecta
7220
droEre1
GRanges object from on UCSC track â€˜D. mel. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droEre1/database/chainDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droEre1/database/chainDm3
UCSC track
RepeatMasker
UCSC
Drosophila erecta
7220
droEre1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droEre1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droEre1/database/rmsk
UCSC track
Assembly
UCSC
Drosophila grimshawi
7222
droGri1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droGri1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droGri1/database/gold
UCSC track
Genscan Genes
UCSC
Drosophila grimshawi
7222
droGri1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droGri1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droGri1/database/genscan
UCSC track
Other mRNAs
UCSC
Drosophila grimshawi
7222
droGri1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droGri1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droGri1/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila grimshawi
7222
droGri1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droGri1/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droGri1/database/netDm2
UCSC track
Simple Repeats
UCSC
Drosophila grimshawi
7222
droGri1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droGri1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droGri1/database/simpleRepeat
UCSC track
Assembly
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/gold
UCSC track
GDP Insertions
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜GDP Insertionsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("pscreen", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/pscreen_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/pscreen
UCSC track
BAC End Pairs
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜BAC End Pairsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/bacEndPairs
UCSC track
FlyBase Genes
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜FlyBase Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("flyBaseGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/flyBaseGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/flyBaseGene
UCSC track
RefSeq Genes
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/refGene
UCSC track
Ensembl Genes
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/ensGene
UCSC track
CONTRAST
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜CONTRASTâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("contrastGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/contrastGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/contrastGene
UCSC track
Human Proteins
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/intronEst
UCSC track
Other mRNAs
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/xenoMrna
UCSC track
Affy Transfrags
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜Affy Transfragsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("affyDrosDevTransfrags", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/affyDrosDevTransfrags_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/affyDrosDevTransfrags
UCSC track
BDTNP ChIP/chip
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜BDTNP ChIP/chipâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bdtnpChipper", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/bdtnpChipper_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/bdtnpChipper
UCSC track
A. gambiae Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜A. gambiae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainAnoGam1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainAnoGam1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainAnoGam1
UCSC track
D. pseudo. Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. pseudo. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDp3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDp3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDp3
UCSC track
D. persimilis Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. persimilis Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDroPer1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDroPer1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDroPer1
UCSC track
D. ananassae Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. ananassae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDroAna2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDroAna2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDroAna2
UCSC track
D. erecta Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. erecta Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDroEre1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDroEre1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDroEre1
UCSC track
D. yakuba Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. yakuba Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDroYak2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDroYak2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDroYak2
UCSC track
D. sechellia Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. sechellia Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDroSec1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDroSec1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDroSec1
UCSC track
D. simulans Chain
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜D. simulans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDroSim1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/chainDroSim1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/chainDroSim1
UCSC track
RepeatMasker
UCSC
Drosophila melanogaster
7227
dm3
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm3/database/rmsk
UCSC track
Chromosome Band
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜Chromosome Bandâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cytoBand", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/cytoBand_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/cytoBand
UCSC track
BAC End Pairs
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜BAC End Pairsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bacEndPairs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/bacEndPairs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/bacEndPairs
UCSC track
FlyBase Genes
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜FlyBase Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("flyBaseGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/flyBaseGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/flyBaseGene
UCSC track
RefSeq Genes
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/refGene
UCSC track
N-SCAN
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜N-SCANâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nscanGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/nscanGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/nscanGene
UCSC track
Genscan Genes
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/genscan
UCSC track
EvoFold
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜EvoFoldâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("evofold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/evofold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/evofold
UCSC track
D. melanogaster mRNAs
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. melanogaster mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/mrna
UCSC track
D. melanogaster ESTs
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. melanogaster ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/est
UCSC track
BDTNP DNase Accs
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜BDTNP DNase Accsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bdtnpDnase", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/bdtnpDnase_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/bdtnpDnase
UCSC track
FlyReg
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜FlyRegâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("flyreg2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/flyreg2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/flyreg2
UCSC track
PicTar miRNA
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜PicTar miRNAâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("picTar", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/picTar_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/picTar
UCSC track
Most Conserved
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements15way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/phastConsElements15way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/phastConsElements15way
UCSC track
A. mellifera Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜A. mellifera Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netApiMel2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netApiMel2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netApiMel2
UCSC track
A. gambiae Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜A. gambiae Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netAnoGam1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netAnoGam1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netAnoGam1
UCSC track
D. virilis Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. virilis Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroVir1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroVir1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroVir1
UCSC track
D. mojavensis Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. mojavensis Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroMoj1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroMoj1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroMoj1
UCSC track
D. pseudo. Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. pseudo. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDp3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDp3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDp3
UCSC track
D. persimilis Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. persimilis Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroPer1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroPer1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroPer1
UCSC track
D. ananassae Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. ananassae Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroAna1
UCSC track
D. yakuba Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. yakuba Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroYak1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroYak1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroYak1
UCSC track
D. sechellia Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. sechellia Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroSec1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroSec1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroSec1
UCSC track
D. simulans Net
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜D. simulans Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroSim1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/netDroSim1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/netDroSim1
UCSC track
Simple Repeats
UCSC
Drosophila melanogaster
7227
dm2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm2/database/simpleRepeat
UCSC track
Gap
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/gap
UCSC track
GC Percent
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/gcPercent
UCSC track
FlyBase Non-coding
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜FlyBase Non-codingâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bdgpNonCoding", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/bdgpNonCoding_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/bdgpNonCoding
UCSC track
Other RefSeq
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/genscan
UCSC track
Human Proteins
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg16KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/blastHg16KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/blastHg16KG
UCSC track
Spliced ESTs
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/intronEst
UCSC track
Other mRNAs
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/xenoMrna
UCSC track
Anopheles Ecores
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜Anopheles Ecoresâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("anophelesEcores", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/anophelesEcores_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/anophelesEcores
UCSC track
A. gambiae Net
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜A. gambiae Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netAnoGam1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/netAnoGam1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/netAnoGam1
UCSC track
D. pseudo. Net
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜D. pseudo. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDp2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/netDp2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/netDp2
UCSC track
D. yakuba Net
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜D. yakuba Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDroYak1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/netDroYak1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/netDroYak1
UCSC track
RepeatMasker
UCSC
Drosophila melanogaster
7227
dm1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dm1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dm1/database/rmsk
UCSC track
Assembly
UCSC
Drosophila mojavensis
7230
droMoj2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj2/database/gold
UCSC track
GeneMapper
UCSC
Drosophila mojavensis
7230
droMoj2
GRanges object from on UCSC track â€˜GeneMapperâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneMapper", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj2/database/geneMapper_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj2/database/geneMapper
UCSC track
D. mel. Proteins
UCSC
Drosophila mojavensis
7230
droMoj2
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj2/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj2/database/blastDm2FB
UCSC track
Other mRNAs
UCSC
Drosophila mojavensis
7230
droMoj2
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj2/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila mojavensis
7230
droMoj2
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj2/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj2/database/netDm2
UCSC track
Simple Repeats
UCSC
Drosophila mojavensis
7230
droMoj2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj2/database/simpleRepeat
UCSC track
GC Percent
UCSC
Drosophila mojavensis
7230
droMoj1
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj1/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj1/database/gcPercent
UCSC track
Geneid Genes
UCSC
Drosophila mojavensis
7230
droMoj1
GRanges object from on UCSC track â€˜Geneid Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj1/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj1/database/geneid
UCSC track
D. mel. Proteins
UCSC
Drosophila mojavensis
7230
droMoj1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj1/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj1/database/blastDm2FB
UCSC track
Other mRNAs
UCSC
Drosophila mojavensis
7230
droMoj1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj1/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila mojavensis
7230
droMoj1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj1/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj1/database/netDm2
UCSC track
Simple Repeats
UCSC
Drosophila mojavensis
7230
droMoj1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droMoj1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droMoj1/database/simpleRepeat
UCSC track
Gap
UCSC
Drosophila persimilis
7234
droPer1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droPer1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droPer1/database/gap
UCSC track
Other RefSeq
UCSC
Drosophila persimilis
7234
droPer1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droPer1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droPer1/database/xenoRefGene
UCSC track
D. mel. Proteins
UCSC
Drosophila persimilis
7234
droPer1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droPer1/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droPer1/database/blastDm2FB
UCSC track
D. mel. Chain
UCSC
Drosophila persimilis
7234
droPer1
GRanges object from on UCSC track â€˜D. mel. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droPer1/database/chainDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droPer1/database/chainDm3
UCSC track
Gap
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/gap
UCSC track
FlyBase
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜FlyBaseâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("flyBaseGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/flyBaseGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/flyBaseGene
UCSC track
Twinscan
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜Twinscanâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/twinscan
UCSC track
Geneid Genes
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜Geneid Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/geneid
UCSC track
D. mel. Proteins
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/blastDm2FB
UCSC track
Spliced ESTs
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/intronEst
UCSC track
Other mRNAs
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/netDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/netDm3
UCSC track
Simple Repeats
UCSC
Drosophila pseudoobscura
7237
dp3
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp3/database/simpleRepeat
UCSC track
GC Percent
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/gcPercent
UCSC track
GeneMapper
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜GeneMapperâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneMapper", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/geneMapper_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/geneMapper
UCSC track
Genscan Genes
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/genscan
UCSC track
D. pseudo. mRNAs
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜D. pseudo. mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/mrna
UCSC track
D. pseudo. ESTs
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜D. pseudo. ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/est
UCSC track
D. mel. Chain
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜D. mel. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDm1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/chainDm1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/chainDm1
UCSC track
RepeatMasker
UCSC
Drosophila pseudoobscura
7237
dp2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/dp2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/dp2/database/rmsk
UCSC track
Assembly
UCSC
Drosophila sechellia
7238
droSec1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSec1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSec1/database/gold
UCSC track
Genscan Genes
UCSC
Drosophila sechellia
7238
droSec1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSec1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSec1/database/genscan
UCSC track
Other mRNAs
UCSC
Drosophila sechellia
7238
droSec1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSec1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSec1/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila sechellia
7238
droSec1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSec1/database/netDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSec1/database/netDm3
UCSC track
Simple Repeats
UCSC
Drosophila sechellia
7238
droSec1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSec1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSec1/database/simpleRepeat
UCSC track
Gap
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/gap
UCSC track
Other RefSeq
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/genscan
UCSC track
D. simulans mRNAs
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜D. simulans mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/mrna
UCSC track
D. simulans ESTs
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜D. simulans ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/est
UCSC track
D. mel. Chain
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜D. mel. Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/chainDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/chainDm3
UCSC track
RepeatMasker
UCSC
Drosophila simulans
7240
droSim1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droSim1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droSim1/database/rmsk
UCSC track
Assembly
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/gold
UCSC track
GeneMapper
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜GeneMapperâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneMapper", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/geneMapper_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/geneMapper
UCSC track
D. mel. Proteins
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/blastDm2FB
UCSC track
Spliced ESTs
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/intronEst
UCSC track
Other mRNAs
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/netDm2
UCSC track
Simple Repeats
UCSC
Drosophila virilis
7244
droVir2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir2/database/simpleRepeat
UCSC track
GC Percent
UCSC
Drosophila virilis
7244
droVir1
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir1/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir1/database/gcPercent
UCSC track
Geneid Genes
UCSC
Drosophila virilis
7244
droVir1
GRanges object from on UCSC track â€˜Geneid Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir1/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir1/database/geneid
UCSC track
D. mel. Proteins
UCSC
Drosophila virilis
7244
droVir1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir1/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir1/database/blastDm2FB
UCSC track
Other mRNAs
UCSC
Drosophila virilis
7244
droVir1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir1/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila virilis
7244
droVir1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir1/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir1/database/netDm2
UCSC track
Simple Repeats
UCSC
Drosophila virilis
7244
droVir1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droVir1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droVir1/database/simpleRepeat
UCSC track
Gap
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/gap
UCSC track
Other RefSeq
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/xenoRefGene
UCSC track
D. mel. Proteins
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/blastDm2FB
UCSC track
Spliced ESTs
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/intronEst
UCSC track
Other mRNAs
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/netDm3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/netDm3
UCSC track
Simple Repeats
UCSC
Drosophila yakuba
7245
droYak2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak2/database/simpleRepeat
UCSC track
Gap
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/gap
UCSC track
Other RefSeq
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/xenoRefGene
UCSC track
Geneid Genes
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜Geneid Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/geneid
UCSC track
D. mel. Proteins
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜D. mel. Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastDm2FB", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/blastDm2FB_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/blastDm2FB
UCSC track
Spliced ESTs
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/intronEst
UCSC track
Other mRNAs
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/xenoMrna
UCSC track
D. mel. Net
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜D. mel. Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netDm2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/netDm2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/netDm2
UCSC track
Simple Repeats
UCSC
Drosophila yakuba
7245
droYak1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/droYak1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/droYak1/database/simpleRepeat
UCSC track
Contigs
UCSC
Caenorhabditis brenneri
135651
caePb2
GRanges object from on UCSC track â€˜Contigsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ctgPos2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb2/database/ctgPos2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb2/database/ctgPos2
UCSC track
tRNA Genes
UCSC
Caenorhabditis brenneri
135651
caePb2
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb2/database/tRNAs
UCSC track
C. brenneri mRNAs
UCSC
Caenorhabditis brenneri
135651
caePb2
GRanges object from on UCSC track â€˜C. brenneri mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb2/database/mrna
UCSC track
C. brenneri ESTs
UCSC
Caenorhabditis brenneri
135651
caePb2
GRanges object from on UCSC track â€˜C. brenneri ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb2/database/est
UCSC track
C. elegans Chain
UCSC
Caenorhabditis brenneri
135651
caePb2
GRanges object from on UCSC track â€˜C. elegans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb2/database/chainCe6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb2/database/chainCe6
UCSC track
WM + SDust
UCSC
Caenorhabditis brenneri
135651
caePb2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb2/database/windowmaskerSdust
UCSC track
Scaffolds
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/gold
UCSC track
Gap
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/gap
UCSC track
tRNA Genes
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/tRNAs
UCSC track
C. brenneri mRNAs
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜C. brenneri mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/mrna
UCSC track
P. pacificus Chain
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜P. pacificus Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainPriPac1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/chainPriPac1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/chainPriPac1
UCSC track
C. briggsae Chain
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜C. briggsae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCb3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/chainCb3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/chainCb3
UCSC track
C. remanei Chain
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜C. remanei Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaeRem2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/chainCaeRem2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/chainCaeRem2
UCSC track
ce4 Chain
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜ce4 Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/chainCe4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/chainCe4
UCSC track
RepeatMasker
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/rmsk
UCSC track
Simple Repeats
UCSC
Caenorhabditis brenneri
135651
caePb1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caePb1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caePb1/database/simpleRepeat
UCSC track
Gap
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/gap
UCSC track
Other RefSeq
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/xenoRefGene
UCSC track
C.elegans Prot.
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜C.elegans Prot.â€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastCe6SG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/blastCe6SG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/blastCe6SG
UCSC track
Spliced ESTs
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/intronEst
UCSC track
Other mRNAs
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/xenoMrna
UCSC track
P. pacificus Net
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜P. pacificus Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netPriPac1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/netPriPac1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/netPriPac1
UCSC track
C. elegans Chain
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜C. elegans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/chainCe6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/chainCe6
UCSC track
C. remanei Net
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜C. remanei Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netCaeRem2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/netCaeRem2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/netCaeRem2
UCSC track
C. brenneri Net
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜C. brenneri Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netCaePb1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/netCaePb1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/netCaePb1
UCSC track
WM + SDust
UCSC
Caenorhabditis briggsae
6238
cb3
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb3/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb3/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Caenorhabditis briggsae
6238
cb1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb1/database/gold
UCSC track
GC Percent
UCSC
Caenorhabditis briggsae
6238
cb1
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb1/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb1/database/gcPercent
UCSC track
Twinscan
UCSC
Caenorhabditis briggsae
6238
cb1
GRanges object from on UCSC track â€˜Twinscanâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb1/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb1/database/twinscan
UCSC track
Spliced ESTs
UCSC
Caenorhabditis briggsae
6238
cb1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb1/database/intronEst
UCSC track
Elegans Chain
UCSC
Caenorhabditis briggsae
6238
cb1
GRanges object from on UCSC track â€˜Elegans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb1/database/chainCe2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb1/database/chainCe2
UCSC track
RepeatMasker
UCSC
Caenorhabditis briggsae
6238
cb1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cb1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cb1/database/rmsk
UCSC track
Assembly
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/gold
UCSC track
Other RefSeq
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/xenoRefGene
UCSC track
Human Proteins
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/intronEst
UCSC track
Other mRNAs
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/xenoMrna
UCSC track
RepeatMasker
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/rmsk
UCSC track
Simple Repeats
UCSC
Caenorhabditis elegans
6239
ce10
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce10/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce10/database/simpleRepeat
UCSC track
Gap
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/gap
UCSC track
WormBase Genes
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜WormBase Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sangerGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/sangerGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/sangerGene
UCSC track
WormBase PseudoGenes
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜WormBase PseudoGenesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sangerPseudoGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/sangerPseudoGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/sangerPseudoGene
UCSC track
Other RefSeq
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/xenoRefGene
UCSC track
tRNA Genes
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/tRNAs
UCSC track
Spliced ESTs
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/intronEst
UCSC track
Other mRNAs
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/xenoMrna
UCSC track
P. pacificus Chain
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜P. pacificus Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainPriPac1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/chainPriPac1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/chainPriPac1
UCSC track
C. japonica Chain
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜C. japonica Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaeJap1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/chainCaeJap1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/chainCaeJap1
UCSC track
C. brenneri Chain
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜C. brenneri Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaePb2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/chainCaePb2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/chainCaePb2
UCSC track
C. briggsae Chain
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜C. briggsae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCb3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/chainCb3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/chainCb3
UCSC track
C. remanei Chain
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜C. remanei Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaeRem3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/chainCaeRem3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/chainCaeRem3
UCSC track
RepeatMasker
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/rmsk
UCSC track
Simple Repeats
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/simpleRepeat
UCSC track
Self Chain
UCSC
Caenorhabditis elegans
6239
ce6
GRanges object from on UCSC track â€˜Self Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce6/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce6/database/chainSelf
UCSC track
Gap
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/gap
UCSC track
WormBase RNAs
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜WormBase RNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sangerRnaGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/sangerRnaGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/sangerRnaGene
UCSC track
RefSeq Genes
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/refGene
UCSC track
tRNA Genes
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/tRNAs
UCSC track
Human Proteins
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/intronEst
UCSC track
Other mRNAs
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/xenoMrna
UCSC track
P. pacificus Chain
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜P. pacificus Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainPriPac1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/chainPriPac1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/chainPriPac1
UCSC track
C. briggsae Chain
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜C. briggsae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCb3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/chainCb3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/chainCb3
UCSC track
C. remanei Chain
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜C. remanei Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaeRem2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/chainCaeRem2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/chainCaeRem2
UCSC track
C. brenneri Chain
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜C. brenneri Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaePb1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/chainCaePb1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/chainCaePb1
UCSC track
RepeatMasker
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/rmsk
UCSC track
Simple Repeats
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/simpleRepeat
UCSC track
Self Chain
UCSC
Caenorhabditis elegans
6239
ce4
GRanges object from on UCSC track â€˜Self Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainSelf", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce4/database/chainSelf_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce4/database/chainSelf
UCSC track
Gap
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/gap
UCSC track
WormBase Genes
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜WormBase Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sangerGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/sangerGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/sangerGene
UCSC track
RefSeq Genes
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/refGene
UCSC track
Twinscan
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜Twinscanâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/twinscan
UCSC track
miRNA
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜miRNAâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("miRNA", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/miRNA_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/miRNA
UCSC track
C. elegans mRNAs
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜C. elegans mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/mrna
UCSC track
C. elegans ESTs
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜C. elegans ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/est
UCSC track
PicTar miRNA
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜PicTar miRNAâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("picTar", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/picTar_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/picTar
UCSC track
Most Conserved
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/phastConsElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/phastConsElements
UCSC track
Briggsae Chain
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜Briggsae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCb1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/chainCb1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/chainCb1
UCSC track
Briggase Aligns
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜Briggase Alignsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("axtNetCb1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/axtNetCb1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/axtNetCb1
UCSC track
Simple Repeats
UCSC
Caenorhabditis elegans
6239
ce2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/ce2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/ce2/database/simpleRepeat
UCSC track
Assembly
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/gold
UCSC track
Gap
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/gap
UCSC track
tRNA Genes
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/tRNAs
UCSC track
C. japonica mRNAs
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜C. japonica mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/mrna
UCSC track
C. japonica ESTs
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜C. japonica ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/est
UCSC track
C. elegans Chain
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜C. elegans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/chainCe6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/chainCe6
UCSC track
WM + SDust
UCSC
Caenorhabditis japonica
281687
caeJap1
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeJap1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeJap1/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/gold
UCSC track
Gap
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/gap
UCSC track
tRNA Genes
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/tRNAs
UCSC track
C. remanei mRNAs
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜C. remanei mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/mrna
UCSC track
C. remanei ESTs
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜C. remanei ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/est
UCSC track
C. elegans Chain
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜C. elegans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/chainCe6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/chainCe6
UCSC track
Assembly
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/gold
UCSC track
Gap
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/gap
UCSC track
Other RefSeq
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/xenoRefGene
UCSC track
C. elegans Proteins
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜C. elegans Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastCe4SG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/blastCe4SG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/blastCe4SG
UCSC track
Spliced ESTs
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/intronEst
UCSC track
Other mRNAs
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/xenoMrna
UCSC track
P. pacificus Net
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜P. pacificus Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netPriPac1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/netPriPac1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/netPriPac1
UCSC track
ce4 Net
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜ce4 Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netCe4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/netCe4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/netCe4
UCSC track
C. brenneri Net
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜C. brenneri Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netCaePb1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/netCaePb1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/netCaePb1
UCSC track
C. briggsae Net
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜C. briggsae Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("netCb3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/netCb3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/netCb3
UCSC track
WM + SDust
UCSC
Caenorhabditis remanei
31234
caeRem2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/gold
UCSC track
Gap
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/gap
UCSC track
tRNA Genes
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/tRNAs
UCSC track
P. pacificus mRNAs
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜P. pacificus mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/mrna
UCSC track
P. pacificus ESTs
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜P. pacificus ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/est
UCSC track
C. briggsae Chain
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜C. briggsae Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCb3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/chainCb3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/chainCb3
UCSC track
C. remanei Chain
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜C. remanei Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaeRem2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/chainCaeRem2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/chainCaeRem2
UCSC track
C. brenneri Chain
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜C. brenneri Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCaePb1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/chainCaePb1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/chainCaePb1
UCSC track
C. elegans Chain
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜C. elegans Chainâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainCe6", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/chainCe6_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/chainCe6
UCSC track
RepeatMasker
UCSC
Pristionchus pacificus
54126
priPac1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/priPac1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/priPac1/database/rmsk
UCSC track
Assembly
UCSC
Aplysia californica
6500
aplCal1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/aplCal1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/aplCal1/database/gold
UCSC track
Other RefSeq
UCSC
Aplysia californica
6500
aplCal1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/aplCal1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/aplCal1/database/xenoRefGene
UCSC track
Sea hare mRNAs
UCSC
Aplysia californica
6500
aplCal1
GRanges object from on UCSC track â€˜Sea hare mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/aplCal1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/aplCal1/database/mrna
UCSC track
Sea hare ESTs
UCSC
Aplysia californica
6500
aplCal1
GRanges object from on UCSC track â€˜Sea hare ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/aplCal1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/aplCal1/database/est
UCSC track
RepeatMasker
UCSC
Aplysia californica
6500
aplCal1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/aplCal1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/aplCal1/database/rmsk
UCSC track
Simple Repeats
UCSC
Aplysia californica
6500
aplCal1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/aplCal1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/aplCal1/database/simpleRepeat
UCSC track
WashU Clones
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜WashU Clonesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sgdClone", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/sgdClone_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/sgdClone
UCSC track
Other RefSeq
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/xenoRefGene
UCSC track
SGD Other
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜SGD Otherâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sgdOther", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/sgdOther_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/sgdOther
UCSC track
Human Proteins
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/intronEst
UCSC track
Regulatory Code
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜Regulatory Codeâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("transRegCode", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/transRegCode_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/transRegCode
UCSC track
Reg. Module
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜Reg. Moduleâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("esRegGeneToMotif", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/esRegGeneToMotif_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/esRegGeneToMotif
UCSC track
Simple Repeats
UCSC
Saccharomyces cerevisiae
4932
sacCer3
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer3/database/simpleRepeat
UCSC track
Publications
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜Publicationsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("pubs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/pubs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/pubs
UCSC track
SGD Genes
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜SGD Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sgdGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/sgdGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/sgdGene
UCSC track
Ensembl Genes
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/ensGene
UCSC track
S. cer. mRNAs
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜S. cer. mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/mrna
UCSC track
S. cer. ESTs
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜S. cer. ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/est
UCSC track
Reg. ChIP-chip
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜Reg. ChIP-chipâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("transRegCodeProbe", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/transRegCodeProbe_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/transRegCodeProbe
UCSC track
ORegAnno
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜ORegAnnoâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("oreganno", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/oreganno_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/oreganno
UCSC track
Simple Repeats
UCSC
Saccharomyces cerevisiae
4932
sacCer2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer2/database/simpleRepeat
UCSC track
GC Percent
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/gcPercent
UCSC track
SGD Genes
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜SGD Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("sgdGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/sgdGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/sgdGene
UCSC track
Ensembl Genes
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/ensGene
UCSC track
S. cer. mRNAs
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜S. cer. mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/mrna
UCSC track
S. cer. ESTs
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜S. cer. ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/est
UCSC track
Reg. ChIP-chip
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜Reg. ChIP-chipâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("transRegCodeProbe", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/transRegCodeProbe_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/transRegCodeProbe
UCSC track
ORegAnno
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜ORegAnnoâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("oreganno", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/oreganno_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/oreganno
UCSC track
Most Conserved
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/phastConsElements_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/phastConsElements
UCSC track
Simple Repeats
UCSC
Saccharomyces cerevisiae
4932
sacCer1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sacCer1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sacCer1/database/simpleRepeat
UCSC track
Gap
UCSC
Sorex araneus
42254
sorAra1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/gap
UCSC track
Other RefSeq
UCSC
Sorex araneus
42254
sorAra1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Sorex araneus
42254
sorAra1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/genscan
UCSC track
CpG Islands
UCSC
Sorex araneus
42254
sorAra1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Sorex araneus
42254
sorAra1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/rmsk
UCSC track
WM + SDust
UCSC
Sorex araneus
42254
sorAra1
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sorAra1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sorAra1/database/windowmaskerSdust
UCSC track
Gap
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/gap
UCSC track
Other RefSeq
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/genscan
UCSC track
Spliced ESTs
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/intronEst
UCSC track
CpG Islands
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/rmsk
UCSC track
WM + SDust
UCSC
Spermophilus tridecemlineatus
43179
speTri2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/speTri2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/speTri2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Saimiri sciureus
9521
saiBol1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/saiBol1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/saiBol1/database/gold
UCSC track
Genscan Genes
UCSC
Saimiri sciureus
9521
saiBol1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/saiBol1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/saiBol1/database/genscan
UCSC track
Other mRNAs
UCSC
Saimiri sciureus
9521
saiBol1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/saiBol1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/saiBol1/database/xenoMrna
UCSC track
Mouse Chain/Net
UCSC
Saimiri sciureus
9521
saiBol1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/saiBol1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/saiBol1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Saimiri sciureus
9521
saiBol1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/saiBol1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/saiBol1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Saimiri sciureus
9521
saiBol1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/saiBol1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/saiBol1/database/simpleRepeat
UCSC track
Assembly
UCSC
Sarcophilus harrisii
9305
sarHar1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sarHar1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sarHar1/database/gold
UCSC track
Ensembl Genes
UCSC
Sarcophilus harrisii
9305
sarHar1
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sarHar1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sarHar1/database/ensGene
UCSC track
Tasmanian devil mRNAs
UCSC
Sarcophilus harrisii
9305
sarHar1
GRanges object from on UCSC track â€˜Tasmanian devil mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sarHar1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sarHar1/database/mrna
UCSC track
CpG Islands
UCSC
Sarcophilus harrisii
9305
sarHar1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sarHar1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sarHar1/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Sarcophilus harrisii
9305
sarHar1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/sarHar1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/sarHar1/database/rmsk
UCSC track
Assembly
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/gold
UCSC track
Ensembl Assembly
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜Ensembl Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensemblGeneScaffold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/ensemblGeneScaffold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/ensemblGeneScaffold
UCSC track
Ensembl Genes
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/ensGene
UCSC track
CpG Islands
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/cpgIslandExt
UCSC track
Human Chain/Net
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/chainNetHg19
UCSC track
Interrupted Rpts
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Echinops telfairi
9371
echTel1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/echTel1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/echTel1/database/simpleRepeat
UCSC track
Gap
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/gap
UCSC track
Other RefSeq
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/xenoRefGene
UCSC track
Genscan Genes
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/genscan
UCSC track
Spliced ESTs
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/intronEst
UCSC track
CpG Islands
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/cpgIslandExt
UCSC track
RepeatMasker
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/rmsk
UCSC track
WM + SDust
UCSC
Tupaia belangeri
37347
tupBel1
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/tupBel1/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/tupBel1/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Macropus eugenii
9315
macEug2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/macEug2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/macEug2/database/gold
UCSC track
Wallaby mRNAs
UCSC
Macropus eugenii
9315
macEug2
GRanges object from on UCSC track â€˜Wallaby mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/macEug2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/macEug2/database/mrna
UCSC track
Wallaby ESTs
UCSC
Macropus eugenii
9315
macEug2
GRanges object from on UCSC track â€˜Wallaby ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/macEug2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/macEug2/database/est
UCSC track
RepeatMasker
UCSC
Macropus eugenii
9315
macEug2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/macEug2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/macEug2/database/rmsk
UCSC track
WM + SDust
UCSC
Macropus eugenii
9315
macEug2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/macEug2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/macEug2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/gold
UCSC track
Genscan Genes
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/genscan
UCSC track
CpG Islands
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/chainNetMm10
UCSC track
Opossum Chain/Net
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜Opossum Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/chainNetMonDom5
UCSC track
Interrupted Rpts
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Ceratotherium simum
9807
cerSim1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/cerSim1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/cerSim1/database/simpleRepeat
UCSC track
Assembly
UCSC
Melopsittacus undulatus
13146
melUnd1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melUnd1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melUnd1/database/gold
UCSC track
Genscan Genes
UCSC
Melopsittacus undulatus
13146
melUnd1
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melUnd1/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melUnd1/database/genscan
UCSC track
CpG Islands
UCSC
Melopsittacus undulatus
13146
melUnd1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melUnd1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melUnd1/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Melopsittacus undulatus
13146
melUnd1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melUnd1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melUnd1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Melopsittacus undulatus
13146
melUnd1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melUnd1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melUnd1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Melopsittacus undulatus
13146
melUnd1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/melUnd1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/melUnd1/database/simpleRepeat
UCSC track
Gap
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/gap
UCSC track
RefSeq Genes
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/refGene
UCSC track
Genscan Genes
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/genscan
UCSC track
Spliced ESTs
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/intronEst
UCSC track
Other mRNAs
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/xenoMrna
UCSC track
Medium ground finch Chain/Net
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Medium ground finch Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGeoFor1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/chainNetGeoFor1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/chainNetGeoFor1
UCSC track
Interrupted Rpts
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/simpleRepeat
UCSC track
Gap
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/gap
UCSC track
RefSeq Genes
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/refGene
UCSC track
Ensembl Genes
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/ensGene
UCSC track
Genscan Genes
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/genscan
UCSC track
Human Proteins
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/intronEst
UCSC track
Other mRNAs
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/xenoMrna
UCSC track
CpG Islands
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/cpgIslandExt
UCSC track
Zebra finch Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Zebra finch Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTaeGut1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetTaeGut1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetTaeGut1
UCSC track
Platypus Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Platypus Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetOrnAna1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetOrnAna1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetOrnAna1
UCSC track
Horse Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Horse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetEquCab2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetEquCab2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetEquCab2
UCSC track
Rat Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Rat Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetRn4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetRn4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetRn4
UCSC track
Chimp Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Chimp Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetPanTro3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetPanTro3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetPanTro3
UCSC track
Turkey Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Turkey Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMelGal1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetMelGal1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetMelGal1
UCSC track
Zebrafish Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetDanRer4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetDanRer4
UCSC track
Fugu Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Fugu Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetFr2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetFr2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetFr2
UCSC track
Lancelet Chain/Net
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Lancelet Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetBraFlo1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/chainNetBraFlo1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/chainNetBraFlo1
UCSC track
BGI Coverage
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜BGI Coverageâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bgiCov", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/bgiCov_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/bgiCov
UCSC track
Simple Repeats
UCSC
Gallus gallus
9031
galGal3
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal3/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal3/database/simpleRepeat
UCSC track
Supercontigs
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Supercontigsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("supercontig", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/supercontig_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/supercontig
UCSC track
Gap
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/gap
UCSC track
RefSeq Genes
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/refGene
UCSC track
Ensembl Genes
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/ensGene
UCSC track
Twinscan
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Twinscanâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("twinscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/twinscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/twinscan
UCSC track
Geneid Genes
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Geneid Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("geneid", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/geneid_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/geneid
UCSC track
RNA Genes
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜RNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rnaGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/rnaGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/rnaGene
UCSC track
Chicken mRNAs
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Chicken mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/mrna
UCSC track
Chicken ESTs
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Chicken ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/est
UCSC track
UniGene
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜UniGeneâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("uniGene_gg", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/uniGene_gg_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/uniGene_gg
UCSC track
Fugu Blat
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Fugu Blatâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blatFr1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/blatFr1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/blatFr1
UCSC track
Opossum Chain/Net
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Opossum Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMonDom1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/chainNetMonDom1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/chainNetMonDom1
UCSC track
Mouse Chain/Net
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm8", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/chainNetMm8_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/chainNetMm8
UCSC track
Human Chain/Net
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/chainNetHg18
UCSC track
Zebrafish Chain/Net
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/chainNetDanRer2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/chainNetDanRer2
UCSC track
BGI SNPs
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜BGI SNPsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("bgiSnp", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/bgiSnp_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/bgiSnp
UCSC track
Segmental Dups
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Segmental Dupsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genomicSuperDups", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/genomicSuperDups_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/genomicSuperDups
UCSC track
Simple Repeats
UCSC
Gallus gallus
9031
galGal2
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal2/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal2/database/simpleRepeat
UCSC track
Assembly
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/gold
UCSC track
Ensembl Genes
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/ensGene
UCSC track
Coelacanth mRNAs
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜Coelacanth mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/mrna
UCSC track
CpG Islands
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/cpgIslandExt
UCSC track
Mouse Chain/Net
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜Mouse Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMm10", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/chainNetMm10_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/chainNetMm10
UCSC track
Interrupted Rpts
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜Interrupted Rptsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("nestedRepeats", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/nestedRepeats_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/nestedRepeats
UCSC track
Simple Repeats
UCSC
Latimeria chalumnae
7897
latCha1
GRanges object from on UCSC track â€˜Simple Repeatsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("simpleRepeat", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/latCha1/database/simpleRepeat_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/latCha1/database/simpleRepeat
UCSC track
Gap
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜Gapâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gap", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/gap_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/gap
UCSC track
RefSeq Genes
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜RefSeq Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("refGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/refGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/refGene
UCSC track
Fugu mRNAs
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜Fugu mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/mrna
UCSC track
Fugu ESTs
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜Fugu ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/est
UCSC track
Tetraodon Chain/Net
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜Tetraodon Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTetNig2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/chainNetTetNig2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/chainNetTetNig2
UCSC track
Stickleback Chain/Net
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜Stickleback Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGasAcu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/chainNetGasAcu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/chainNetGasAcu1
UCSC track
Zebrafish Chain/Net
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer7", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/chainNetDanRer7_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/chainNetDanRer7
UCSC track
RepeatMasker
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/rmsk
UCSC track
WM + SDust
UCSC
Fugu rubripes
31033
fr3
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr3/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr3/database/windowmaskerSdust
UCSC track
Scaffolds
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/gold
UCSC track
tRNA Genes
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/tRNAs
UCSC track
Fugu mRNAs
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Fugu mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/mrna
UCSC track
Fugu ESTs
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Fugu ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/est
UCSC track
Tetraodon Chain/Net
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Tetraodon Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetTetNig2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/chainNetTetNig2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/chainNetTetNig2
UCSC track
Stickleback Chain/Net
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Stickleback Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGasAcu1", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/chainNetGasAcu1_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/chainNetGasAcu1
UCSC track
Chicken Chain/Net
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Chicken Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetGalGal3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/chainNetGalGal3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/chainNetGalGal3
UCSC track
Human Chain/Net
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/chainNetHg19
UCSC track
WM + SDust
UCSC
Fugu rubripes
31033
fr2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr2/database/windowmaskerSdust
UCSC track
Scaffolds
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Scaffoldsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/gold
UCSC track
GC Percent
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜GC Percentâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gcPercent", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/gcPercent_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/gcPercent
UCSC track
Ensembl Genes
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Ensembl Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ensGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/ensGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/ensGene
UCSC track
Fugu mRNAs
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Fugu mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("mrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/mrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/mrna
UCSC track
Fugu ESTs
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Fugu ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("est", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/est_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/est
UCSC track
Human Ecores
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Human Ecoresâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ecoresHg16", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/ecoresHg16_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/ecoresHg16
UCSC track
Rat Ecores
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Rat Ecoresâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("ecoresRn3", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/ecoresRn3_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/ecoresRn3
UCSC track
Zebrafish Chain/Net
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Zebrafish Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetDanRer4", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/chainNetDanRer4_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/chainNetDanRer4
UCSC track
Human Chain/Net
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg18", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/chainNetHg18_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/chainNetHg18
UCSC track
RepeatMasker
UCSC
Fugu rubripes
31033
fr1
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/fr1/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/fr1/database/rmsk
UCSC track
Assembly
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/gold
UCSC track
Genscan Genes
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜Genscan Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("genscan", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/genscan_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/genscan
UCSC track
Spliced ESTs
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/intronEst
UCSC track
CpG Islands
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜CpG Islandsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("cpgIslandExt", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/cpgIslandExt_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/cpgIslandExt
UCSC track
Medaka Chain/Net
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜Medaka Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetOryLat2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/chainNetOryLat2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/chainNetOryLat2
UCSC track
Opossum Chain/Net
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜Opossum Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetMonDom5", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/chainNetMonDom5_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/chainNetMonDom5
UCSC track
Human Chain/Net
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/chainNetHg19
UCSC track
RepeatMasker
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜RepeatMaskerâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("rmsk", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/rmsk_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/rmsk
UCSC track
WM + SDust
UCSC
Petromyzon marinus
7757
petMar2
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar2/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar2/database/windowmaskerSdust
UCSC track
Assembly
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Assemblyâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("gold", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/gold_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/gold
UCSC track
Other RefSeq
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/xenoRefGene
UCSC track
Human Proteins
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Human Proteinsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("blastHg18KG", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/blastHg18KG_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/blastHg18KG
UCSC track
Spliced ESTs
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Spliced ESTsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("intronEst", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/intronEst_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/intronEst
UCSC track
Other mRNAs
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Other mRNAsâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoMrna", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/xenoMrna_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/xenoMrna
UCSC track
Most Conserved
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Most Conservedâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("phastConsElements6way", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/phastConsElements6way_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/phastConsElements6way
UCSC track
Human Chain/Net
UCSC
Petromyzon marinus
7757
petMar1
GRanges object from on UCSC track â€˜Human Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetHg19", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/petMar1/database/chainNetHg19_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/petMar1/database/chainNetHg19
UCSC track
Other RefSeq
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜Other RefSeqâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("xenoRefGene", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/xenoRefGene_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/xenoRefGene
UCSC track
tRNA Genes
UCSC
Anolis carolinensis
28377
anoCar2
GRanges object from on UCSC track â€˜tRNA Genesâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("tRNAs", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/anoCar2/database/tRNAs_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/anoCar2/database/tRNAs
UCSC track
Lamprey Chain/Net
UCSC
Gallus gallus
9031
galGal4
GRanges object from on UCSC track â€˜Lamprey Chain/Netâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("chainNetPetMar2", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/galGal4/database/chainNetPetMar2_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/galGal4/database/chainNetPetMar2
UCSC track
WM + SDust
UCSC
Caenorhabditis remanei
31234
caeRem3
GRanges object from on UCSC track â€˜WM + SDustâ€™
1
Marc Carlson <mcarlson@fhcrc.org>
2013-04-04
UCSCFullTrackImportPreparer
c("windowmaskerSdust", "UCSC", "track", "Gene", "Transcript", "Annotation")
GRanges
goldenpath/caeRem3/database/windowmaskerSdust_0.0.1.RData
rtracklayer://hgdownload.cse.ucsc.edu/goldenpath/caeRem3/database/windowmaskerSdust
UCSC track
Rattus_norvegicus.RGSC3.4.69.gtf
Ensembl
Rattus norvegicus
10116
RGSC3.4
Gene Annotation for Rattus norvegicus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/rattus_norvegicus/Rattus_norvegicus.RGSC3.4.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/rattus_norvegicus/Rattus_norvegicus.RGSC3.4.69.gtf.gz
GTF
Saccharomyces_cerevisiae.EF4.69.gtf
Ensembl
Saccharomyces cerevisiae
4932
EF4
Gene Annotation for Saccharomyces cerevisiae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.69.gtf.gz
GTF
Sarcophilus_harrisii.DEVIL7.0.69.gtf
Ensembl
Sarcophilus harrisii
9305
DEVIL7.0
Gene Annotation for Sarcophilus harrisii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.69.gtf.gz
GTF
Sorex_araneus.COMMON_SHREW1.69.gtf
Ensembl
Sorex araneus
42254
COMMON_SHREW1
Gene Annotation for Sorex araneus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.69.gtf.gz
GTF
Sus_scrofa.Sscrofa10.2.69.gtf
Ensembl
Sus scrofa
9823
Sscrofa10.2
Gene Annotation for Sus scrofa
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.69.gtf.gz
GTF
Taeniopygia_guttata.taeGut3.2.4.69.gtf
Ensembl
Taeniopygia guttata
59729
taeGut3.2.4
Gene Annotation for Taeniopygia guttata
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.69.gtf.gz
GTF
Takifugu_rubripes.FUGU4.69.gtf
Ensembl
Takifugu rubripes
31033
FUGU4
Gene Annotation for Takifugu rubripes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.69.gtf.gz
GTF
Tarsius_syrichta.tarSyr1.69.gtf
Ensembl
Tarsius syrichta
1868482
tarSyr1
Gene Annotation for Tarsius syrichta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.69.gtf.gz
GTF
Tetraodon_nigroviridis.TETRAODON8.69.gtf
Ensembl
Tetraodon nigroviridis
99883
TETRAODON8
Gene Annotation for Tetraodon nigroviridis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.69.gtf.gz
GTF
Tupaia_belangeri.TREESHREW.69.gtf
Ensembl
Tupaia belangeri
37347
TREESHREW
Gene Annotation for Tupaia belangeri
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.69.gtf.gz
GTF
Tursiops_truncatus.turTru1.69.gtf
Ensembl
Tursiops truncatus
9739
turTru1
Gene Annotation for Tursiops truncatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.69.gtf.gz
GTF
Vicugna_pacos.vicPac1.69.gtf
Ensembl
Vicugna pacos
30538
vicPac1
Gene Annotation for Vicugna pacos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.69.gtf.gz
GTF
Xenopus_tropicalis.JGI_4.2.69.gtf
Ensembl
Xenopus tropicalis
8364
JGI_4.2
Gene Annotation for Xenopus tropicalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.69.gtf.gz
GTF
Xiphophorus_maculatus.Xipmac4.4.2.69.gtf
Ensembl
Xiphophorus maculatus
8083
Xipmac4.4.2
Gene Annotation for Xiphophorus maculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.69.gtf.gz
GTF
Ailuropoda_melanoleuca.ailMel1.70.gtf
Ensembl
Ailuropoda melanoleuca
9646
ailMel1
Gene Annotation for Ailuropoda melanoleuca
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.70.gtf.gz
GTF
Anolis_carolinensis.AnoCar2.0.70.gtf
Ensembl
Anolis carolinensis
28377
AnoCar2.0
Gene Annotation for Anolis carolinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.70.gtf.gz
GTF
Bos_taurus.UMD3.1.70.gtf
Ensembl
Bos taurus
9913
UMD3.1
Gene Annotation for Bos taurus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/bos_taurus/Bos_taurus.UMD3.1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/bos_taurus/Bos_taurus.UMD3.1.70.gtf.gz
GTF
Caenorhabditis_elegans.WBcel215.70.gtf
Ensembl
Caenorhabditis elegans
6239
WBcel215
Gene Annotation for Caenorhabditis elegans
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.70.gtf.gz
GTF
Callithrix_jacchus.C_jacchus3.2.1.70.gtf
Ensembl
Callithrix jacchus
9483
C_jacchus3.2.1
Gene Annotation for Callithrix jacchus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.70.gtf.gz
GTF
Canis_familiaris.CanFam3.1.70.gtf
Ensembl
Canis familiaris
9615
CanFam3.1
Gene Annotation for Canis familiaris
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.70.gtf.gz
GTF
Cavia_porcellus.cavPor3.70.gtf
Ensembl
Cavia porcellus
10141
cavPor3
Gene Annotation for Cavia porcellus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.70.gtf.gz
GTF
Choloepus_hoffmanni.choHof1.70.gtf
Ensembl
Choloepus hoffmanni
9358
choHof1
Gene Annotation for Choloepus hoffmanni
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.70.gtf.gz
GTF
Ciona_intestinalis.KH.70.gtf
Ensembl
Ciona intestinalis
7719
KH
Gene Annotation for Ciona intestinalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/ciona_intestinalis/Ciona_intestinalis.KH.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/ciona_intestinalis/Ciona_intestinalis.KH.70.gtf.gz
GTF
Ciona_savignyi.CSAV2.0.70.gtf
Ensembl
Ciona savignyi
51511
CSAV2.0
Gene Annotation for Ciona savignyi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.70.gtf.gz
GTF
Danio_rerio.Zv9.70.gtf
Ensembl
Danio rerio
7955
Zv9
Gene Annotation for Danio rerio
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/danio_rerio/Danio_rerio.Zv9.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/danio_rerio/Danio_rerio.Zv9.70.gtf.gz
GTF
Dasypus_novemcinctus.dasNov2.70.gtf
Ensembl
Dasypus novemcinctus
9361
dasNov2
Gene Annotation for Dasypus novemcinctus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.70.gtf.gz
GTF
Dipodomys_ordii.dipOrd1.70.gtf
Ensembl
Dipodomys ordii
10020
dipOrd1
Gene Annotation for Dipodomys ordii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.70.gtf.gz
GTF
Drosophila_melanogaster.BDGP5.70.gtf
Ensembl
Drosophila melanogaster
7227
BDGP5
Gene Annotation for Drosophila melanogaster
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.70.gtf.gz
GTF
Echinops_telfairi.TENREC.70.gtf
Ensembl
Echinops telfairi
9371
TENREC
Gene Annotation for Echinops telfairi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/echinops_telfairi/Echinops_telfairi.TENREC.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/echinops_telfairi/Echinops_telfairi.TENREC.70.gtf.gz
GTF
Equus_caballus.EquCab2.70.gtf
Ensembl
Equus caballus
9796
EquCab2
Gene Annotation for Equus caballus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/equus_caballus/Equus_caballus.EquCab2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/equus_caballus/Equus_caballus.EquCab2.70.gtf.gz
GTF
Erinaceus_europaeus.HEDGEHOG.70.gtf
Ensembl
Erinaceus europaeus
9365
HEDGEHOG
Gene Annotation for Erinaceus europaeus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.70.gtf.gz
GTF
Felis_catus.Felis_catus_6.2.70.gtf
Ensembl
Felis catus
9685
Felis_catus_6.2
Gene Annotation for Felis catus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/felis_catus/Felis_catus.Felis_catus_6.2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/felis_catus/Felis_catus.Felis_catus_6.2.70.gtf.gz
GTF
Gadus_morhua.gadMor1.70.gtf
Ensembl
Gadus morhua
8049
gadMor1
Gene Annotation for Gadus morhua
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/gadus_morhua/Gadus_morhua.gadMor1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/gadus_morhua/Gadus_morhua.gadMor1.70.gtf.gz
GTF
Gallus_gallus.WASHUC2.70.gtf
Ensembl
Gallus gallus
9031
WASHUC2
Gene Annotation for Gallus gallus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/gallus_gallus/Gallus_gallus.WASHUC2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/gallus_gallus/Gallus_gallus.WASHUC2.70.gtf.gz
GTF
Gasterosteus_aculeatus.BROADS1.70.gtf
Ensembl
Gasterosteus aculeatus
69293
BROADS1
Gene Annotation for Gasterosteus aculeatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.70.gtf.gz
GTF
Gorilla_gorilla.gorGor3.1.70.gtf
Ensembl
Gorilla gorilla
9593
gorGor3.1
Gene Annotation for Gorilla gorilla
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.70.gtf.gz
GTF
Homo_sapiens.GRCh37.70.gtf
Ensembl
Homo sapiens
9606
GRCh37
Gene Annotation for Homo sapiens
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/homo_sapiens/Homo_sapiens.GRCh37.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/homo_sapiens/Homo_sapiens.GRCh37.70.gtf.gz
GTF
Ictidomys_tridecemlineatus.spetri2.70.gtf
Ensembl
Ictidomys tridecemlineatus
43179
spetri2
Gene Annotation for Ictidomys tridecemlineatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.70.gtf.gz
GTF
Latimeria_chalumnae.LatCha1.70.gtf
Ensembl
Latimeria chalumnae
7897
LatCha1
Gene Annotation for Latimeria chalumnae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.70.gtf.gz
GTF
Loxodonta_africana.loxAfr3.70.gtf
Ensembl
Loxodonta africana
9785
loxAfr3
Gene Annotation for Loxodonta africana
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.70.gtf.gz
GTF
Macaca_mulatta.MMUL_1.70.gtf
Ensembl
Macaca mulatta
9544
MMUL_1
Gene Annotation for Macaca mulatta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.70.gtf.gz
GTF
Macropus_eugenii.Meug_1.0.70.gtf
Ensembl
Macropus eugenii
9315
Meug_1.0
Gene Annotation for Macropus eugenii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.70.gtf.gz
GTF
Meleagris_gallopavo.UMD2.70.gtf
Ensembl
Meleagris gallopavo
9103
UMD2
Gene Annotation for Meleagris gallopavo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.70.gtf.gz
GTF
Microcebus_murinus.micMur1.70.gtf
Ensembl
Microcebus murinus
30608
micMur1
Gene Annotation for Microcebus murinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/microcebus_murinus/Microcebus_murinus.micMur1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/microcebus_murinus/Microcebus_murinus.micMur1.70.gtf.gz
GTF
Monodelphis_domestica.BROADO5.70.gtf
Ensembl
Monodelphis domestica
13616
BROADO5
Gene Annotation for Monodelphis domestica
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.70.gtf.gz
GTF
Mus_musculus.GRCm38.70.gtf
Ensembl
Mus musculus
10090
GRCm38
Gene Annotation for Mus musculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/mus_musculus/Mus_musculus.GRCm38.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/mus_musculus/Mus_musculus.GRCm38.70.gtf.gz
GTF
Mustela_putorius_furo.MusPutFur1.0.70.gtf
Ensembl
Mustela putorius furo
9669
MusPutFur1.0
Gene Annotation for Mustela putorius furo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.70.gtf.gz
GTF
Myotis_lucifugus.Myoluc2.0.70.gtf
Ensembl
Myotis lucifugus
59463
Myoluc2.0
Gene Annotation for Myotis lucifugus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.70.gtf.gz
GTF
Nomascus_leucogenys.Nleu1.0.70.gtf
Ensembl
Nomascus leucogenys
61853
Nleu1.0
Gene Annotation for Nomascus leucogenys
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.70.gtf.gz
GTF
Ochotona_princeps.pika.70.gtf
Ensembl
Ochotona princeps
9978
pika
Gene Annotation for Ochotona princeps
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/ochotona_princeps/Ochotona_princeps.pika.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/ochotona_princeps/Ochotona_princeps.pika.70.gtf.gz
GTF
Oreochromis_niloticus.Orenil1.0.70.gtf
Ensembl
Oreochromis niloticus
8128
Orenil1.0
Gene Annotation for Oreochromis niloticus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.70.gtf.gz
GTF
Ornithorhynchus_anatinus.OANA5.70.gtf
Ensembl
Ornithorhynchus anatinus
9258
OANA5
Gene Annotation for Ornithorhynchus anatinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.70.gtf.gz
GTF
Oryctolagus_cuniculus.oryCun2.70.gtf
Ensembl
Oryctolagus cuniculus
9986
oryCun2
Gene Annotation for Oryctolagus cuniculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.70.gtf.gz
GTF
Oryzias_latipes.MEDAKA1.70.gtf
Ensembl
Oryzias latipes
8090
MEDAKA1
Gene Annotation for Oryzias latipes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.70.gtf.gz
GTF
Otolemur_garnettii.OtoGar3.70.gtf
Ensembl
Otolemur garnettii
30611
OtoGar3
Gene Annotation for Otolemur garnettii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.70.gtf.gz
GTF
Pan_troglodytes.CHIMP2.1.4.70.gtf
Ensembl
Pan troglodytes
9598
CHIMP2.1.4
Gene Annotation for Pan troglodytes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.70.gtf.gz
GTF
Pelodiscus_sinensis.PelSin_1.0.70.gtf
Ensembl
Pelodiscus sinensis
13735
PelSin_1.0
Gene Annotation for Pelodiscus sinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.70.gtf.gz
GTF
Petromyzon_marinus.Pmarinus_7.0.70.gtf
Ensembl
Petromyzon marinus
7757
Pmarinus_7.0
Gene Annotation for Petromyzon marinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.70.gtf.gz
GTF
Pongo_abelii.PPYG2.70.gtf
Ensembl
Pongo abelii
9601
PPYG2
Gene Annotation for Pongo abelii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/pongo_abelii/Pongo_abelii.PPYG2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/pongo_abelii/Pongo_abelii.PPYG2.70.gtf.gz
GTF
Procavia_capensis.proCap1.70.gtf
Ensembl
Procavia capensis
9813
proCap1
Gene Annotation for Procavia capensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/procavia_capensis/Procavia_capensis.proCap1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/procavia_capensis/Procavia_capensis.proCap1.70.gtf.gz
GTF
Pteropus_vampyrus.pteVam1.70.gtf
Ensembl
Pteropus vampyrus
132908
pteVam1
Gene Annotation for Pteropus vampyrus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.70.gtf.gz
GTF
Rattus_norvegicus.Rnor_5.0.70.gtf
Ensembl
Rattus norvegicus
10116
Rnor_5.0
Gene Annotation for Rattus norvegicus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.70.gtf.gz
GTF
Saccharomyces_cerevisiae.EF4.70.gtf
Ensembl
Saccharomyces cerevisiae
4932
EF4
Gene Annotation for Saccharomyces cerevisiae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.70.gtf.gz
GTF
Sarcophilus_harrisii.DEVIL7.0.70.gtf
Ensembl
Sarcophilus harrisii
9305
DEVIL7.0
Gene Annotation for Sarcophilus harrisii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.70.gtf.gz
GTF
Sorex_araneus.COMMON_SHREW1.70.gtf
Ensembl
Sorex araneus
42254
COMMON_SHREW1
Gene Annotation for Sorex araneus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.70.gtf.gz
GTF
Sus_scrofa.Sscrofa10.2.70.gtf
Ensembl
Sus scrofa
9823
Sscrofa10.2
Gene Annotation for Sus scrofa
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.70.gtf.gz
GTF
Taeniopygia_guttata.taeGut3.2.4.70.gtf
Ensembl
Taeniopygia guttata
59729
taeGut3.2.4
Gene Annotation for Taeniopygia guttata
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.70.gtf.gz
GTF
Takifugu_rubripes.FUGU4.70.gtf
Ensembl
Takifugu rubripes
31033
FUGU4
Gene Annotation for Takifugu rubripes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.70.gtf.gz
GTF
Tarsius_syrichta.tarSyr1.70.gtf
Ensembl
Tarsius syrichta
1868482
tarSyr1
Gene Annotation for Tarsius syrichta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.70.gtf.gz
GTF
Tetraodon_nigroviridis.TETRAODON8.70.gtf
Ensembl
Tetraodon nigroviridis
99883
TETRAODON8
Gene Annotation for Tetraodon nigroviridis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.70.gtf.gz
GTF
Tupaia_belangeri.TREESHREW.70.gtf
Ensembl
Tupaia belangeri
37347
TREESHREW
Gene Annotation for Tupaia belangeri
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.70.gtf.gz
GTF
Tursiops_truncatus.turTru1.70.gtf
Ensembl
Tursiops truncatus
9739
turTru1
Gene Annotation for Tursiops truncatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.70.gtf.gz
GTF
Vicugna_pacos.vicPac1.70.gtf
Ensembl
Vicugna pacos
30538
vicPac1
Gene Annotation for Vicugna pacos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.70.gtf.gz
GTF
Xenopus_tropicalis.JGI_4.2.70.gtf
Ensembl
Xenopus tropicalis
8364
JGI_4.2
Gene Annotation for Xenopus tropicalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.70.gtf.gz
GTF
Xiphophorus_maculatus.Xipmac4.4.2.70.gtf
Ensembl
Xiphophorus maculatus
8083
Xipmac4.4.2
Gene Annotation for Xiphophorus maculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-24
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-70/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.70.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-70/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.70.gtf.gz
GTF
Ailuropoda_melanoleuca.ailMel1.69.gtf
Ensembl
Ailuropoda melanoleuca
9646
ailMel1
Gene Annotation for Ailuropoda melanoleuca
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.69.gtf.gz
GTF
Anolis_carolinensis.AnoCar2.0.69.gtf
Ensembl
Anolis carolinensis
28377
AnoCar2.0
Gene Annotation for Anolis carolinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.69.gtf.gz
GTF
Bos_taurus.UMD3.1.69.gtf
Ensembl
Bos taurus
9913
UMD3.1
Gene Annotation for Bos taurus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/bos_taurus/Bos_taurus.UMD3.1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/bos_taurus/Bos_taurus.UMD3.1.69.gtf.gz
GTF
Caenorhabditis_elegans.WBcel215.69.gtf
Ensembl
Caenorhabditis elegans
6239
WBcel215
Gene Annotation for Caenorhabditis elegans
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel215.69.gtf.gz
GTF
Callithrix_jacchus.C_jacchus3.2.1.69.gtf
Ensembl
Callithrix jacchus
9483
C_jacchus3.2.1
Gene Annotation for Callithrix jacchus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.69.gtf.gz
GTF
Canis_familiaris.CanFam3.1.69.gtf
Ensembl
Canis familiaris
9615
CanFam3.1
Gene Annotation for Canis familiaris
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.69.gtf.gz
GTF
Cavia_porcellus.cavPor3.69.gtf
Ensembl
Cavia porcellus
10141
cavPor3
Gene Annotation for Cavia porcellus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.69.gtf.gz
GTF
Choloepus_hoffmanni.choHof1.69.gtf
Ensembl
Choloepus hoffmanni
9358
choHof1
Gene Annotation for Choloepus hoffmanni
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.69.gtf.gz
GTF
Ciona_intestinalis.KH.69.gtf
Ensembl
Ciona intestinalis
7719
KH
Gene Annotation for Ciona intestinalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/ciona_intestinalis/Ciona_intestinalis.KH.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/ciona_intestinalis/Ciona_intestinalis.KH.69.gtf.gz
GTF
Ciona_savignyi.CSAV2.0.69.gtf
Ensembl
Ciona savignyi
51511
CSAV2.0
Gene Annotation for Ciona savignyi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.69.gtf.gz
GTF
Danio_rerio.Zv9.69.gtf
Ensembl
Danio rerio
7955
Zv9
Gene Annotation for Danio rerio
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/danio_rerio/Danio_rerio.Zv9.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/danio_rerio/Danio_rerio.Zv9.69.gtf.gz
GTF
Dasypus_novemcinctus.dasNov2.69.gtf
Ensembl
Dasypus novemcinctus
9361
dasNov2
Gene Annotation for Dasypus novemcinctus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.69.gtf.gz
GTF
Dipodomys_ordii.dipOrd1.69.gtf
Ensembl
Dipodomys ordii
10020
dipOrd1
Gene Annotation for Dipodomys ordii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.69.gtf.gz
GTF
Drosophila_melanogaster.BDGP5.69.gtf
Ensembl
Drosophila melanogaster
7227
BDGP5
Gene Annotation for Drosophila melanogaster
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.69.gtf.gz
GTF
Echinops_telfairi.TENREC.69.gtf
Ensembl
Echinops telfairi
9371
TENREC
Gene Annotation for Echinops telfairi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/echinops_telfairi/Echinops_telfairi.TENREC.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/echinops_telfairi/Echinops_telfairi.TENREC.69.gtf.gz
GTF
Equus_caballus.EquCab2.69.gtf
Ensembl
Equus caballus
9796
EquCab2
Gene Annotation for Equus caballus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/equus_caballus/Equus_caballus.EquCab2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/equus_caballus/Equus_caballus.EquCab2.69.gtf.gz
GTF
Erinaceus_europaeus.HEDGEHOG.69.gtf
Ensembl
Erinaceus europaeus
9365
HEDGEHOG
Gene Annotation for Erinaceus europaeus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.69.gtf.gz
GTF
Felis_catus.CAT.69.gtf
Ensembl
Felis catus
9685
CAT
Gene Annotation for Felis catus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/felis_catus/Felis_catus.CAT.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/felis_catus/Felis_catus.CAT.69.gtf.gz
GTF
Gadus_morhua.gadMor1.69.gtf
Ensembl
Gadus morhua
8049
gadMor1
Gene Annotation for Gadus morhua
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/gadus_morhua/Gadus_morhua.gadMor1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/gadus_morhua/Gadus_morhua.gadMor1.69.gtf.gz
GTF
Gallus_gallus.WASHUC2.69.gtf
Ensembl
Gallus gallus
9031
WASHUC2
Gene Annotation for Gallus gallus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/gallus_gallus/Gallus_gallus.WASHUC2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/gallus_gallus/Gallus_gallus.WASHUC2.69.gtf.gz
GTF
Gasterosteus_aculeatus.BROADS1.69.gtf
Ensembl
Gasterosteus aculeatus
69293
BROADS1
Gene Annotation for Gasterosteus aculeatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.69.gtf.gz
GTF
Gorilla_gorilla.gorGor3.1.69.gtf
Ensembl
Gorilla gorilla
9593
gorGor3.1
Gene Annotation for Gorilla gorilla
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.69.gtf.gz
GTF
Homo_sapiens.GRCh37.69.gtf
Ensembl
Homo sapiens
9606
GRCh37
Gene Annotation for Homo sapiens
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/homo_sapiens/Homo_sapiens.GRCh37.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/homo_sapiens/Homo_sapiens.GRCh37.69.gtf.gz
GTF
Ictidomys_tridecemlineatus.spetri2.69.gtf
Ensembl
Ictidomys tridecemlineatus
43179
spetri2
Gene Annotation for Ictidomys tridecemlineatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.69.gtf.gz
GTF
Latimeria_chalumnae.LatCha1.69.gtf
Ensembl
Latimeria chalumnae
7897
LatCha1
Gene Annotation for Latimeria chalumnae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.69.gtf.gz
GTF
Loxodonta_africana.loxAfr3.69.gtf
Ensembl
Loxodonta africana
9785
loxAfr3
Gene Annotation for Loxodonta africana
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.69.gtf.gz
GTF
Macaca_mulatta.MMUL_1.69.gtf
Ensembl
Macaca mulatta
9544
MMUL_1
Gene Annotation for Macaca mulatta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.69.gtf.gz
GTF
Macropus_eugenii.Meug_1.0.69.gtf
Ensembl
Macropus eugenii
9315
Meug_1.0
Gene Annotation for Macropus eugenii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.69.gtf.gz
GTF
Meleagris_gallopavo.UMD2.69.gtf
Ensembl
Meleagris gallopavo
9103
UMD2
Gene Annotation for Meleagris gallopavo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.69.gtf.gz
GTF
Microcebus_murinus.micMur1.69.gtf
Ensembl
Microcebus murinus
30608
micMur1
Gene Annotation for Microcebus murinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/microcebus_murinus/Microcebus_murinus.micMur1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/microcebus_murinus/Microcebus_murinus.micMur1.69.gtf.gz
GTF
Monodelphis_domestica.BROADO5.69.gtf
Ensembl
Monodelphis domestica
13616
BROADO5
Gene Annotation for Monodelphis domestica
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.69.gtf.gz
GTF
Mus_musculus.GRCm38.69.gtf
Ensembl
Mus musculus
10090
GRCm38
Gene Annotation for Mus musculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/mus_musculus/Mus_musculus.GRCm38.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/mus_musculus/Mus_musculus.GRCm38.69.gtf.gz
GTF
Mustela_putorius_furo.MusPutFur1.0.69.gtf
Ensembl
Mustela putorius furo
9669
MusPutFur1.0
Gene Annotation for Mustela putorius furo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.69.gtf.gz
GTF
Myotis_lucifugus.Myoluc2.0.69.gtf
Ensembl
Myotis lucifugus
59463
Myoluc2.0
Gene Annotation for Myotis lucifugus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.69.gtf.gz
GTF
Nomascus_leucogenys.Nleu1.0.69.gtf
Ensembl
Nomascus leucogenys
61853
Nleu1.0
Gene Annotation for Nomascus leucogenys
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.69.gtf.gz
GTF
Ochotona_princeps.pika.69.gtf
Ensembl
Ochotona princeps
9978
pika
Gene Annotation for Ochotona princeps
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/ochotona_princeps/Ochotona_princeps.pika.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/ochotona_princeps/Ochotona_princeps.pika.69.gtf.gz
GTF
Oreochromis_niloticus.Orenil1.0.69.gtf
Ensembl
Oreochromis niloticus
8128
Orenil1.0
Gene Annotation for Oreochromis niloticus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.69.gtf.gz
GTF
Ornithorhynchus_anatinus.OANA5.69.gtf
Ensembl
Ornithorhynchus anatinus
9258
OANA5
Gene Annotation for Ornithorhynchus anatinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.69.gtf.gz
GTF
Oryctolagus_cuniculus.oryCun2.69.gtf
Ensembl
Oryctolagus cuniculus
9986
oryCun2
Gene Annotation for Oryctolagus cuniculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.69.gtf.gz
GTF
Oryzias_latipes.MEDAKA1.69.gtf
Ensembl
Oryzias latipes
8090
MEDAKA1
Gene Annotation for Oryzias latipes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.69.gtf.gz
GTF
Otolemur_garnettii.OtoGar3.69.gtf
Ensembl
Otolemur garnettii
30611
OtoGar3
Gene Annotation for Otolemur garnettii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.69.gtf.gz
GTF
Pan_troglodytes.CHIMP2.1.4.69.gtf
Ensembl
Pan troglodytes
9598
CHIMP2.1.4
Gene Annotation for Pan troglodytes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.69.gtf.gz
GTF
Pelodiscus_sinensis.PelSin_1.0.69.gtf
Ensembl
Pelodiscus sinensis
13735
PelSin_1.0
Gene Annotation for Pelodiscus sinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.69.gtf.gz
GTF
Petromyzon_marinus.Pmarinus_7.0.69.gtf
Ensembl
Petromyzon marinus
7757
Pmarinus_7.0
Gene Annotation for Petromyzon marinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.69.gtf.gz
GTF
Pongo_abelii.PPYG2.69.gtf
Ensembl
Pongo abelii
9601
PPYG2
Gene Annotation for Pongo abelii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/pongo_abelii/Pongo_abelii.PPYG2.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/pongo_abelii/Pongo_abelii.PPYG2.69.gtf.gz
GTF
Procavia_capensis.proCap1.69.gtf
Ensembl
Procavia capensis
9813
proCap1
Gene Annotation for Procavia capensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/procavia_capensis/Procavia_capensis.proCap1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/procavia_capensis/Procavia_capensis.proCap1.69.gtf.gz
GTF
Pteropus_vampyrus.pteVam1.69.gtf
Ensembl
Pteropus vampyrus
132908
pteVam1
Gene Annotation for Pteropus vampyrus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-25
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-69/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.69.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-69/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.69.gtf.gz
GTF
Ailuropoda_melanoleuca.ailMel1.71.gtf
Ensembl
Ailuropoda melanoleuca
9646
ailMel1
Gene Annotation for Ailuropoda melanoleuca
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.71.gtf.gz
GTF
Anolis_carolinensis.AnoCar2.0.71.gtf
Ensembl
Anolis carolinensis
28377
AnoCar2.0
Gene Annotation for Anolis carolinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.71.gtf.gz
GTF
Bos_taurus.UMD3.1.71.gtf
Ensembl
Bos taurus
9913
UMD3.1
Gene Annotation for Bos taurus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/bos_taurus/Bos_taurus.UMD3.1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/bos_taurus/Bos_taurus.UMD3.1.71.gtf.gz
GTF
Caenorhabditis_elegans.WBcel235.71.gtf
Ensembl
Caenorhabditis elegans
6239
WBcel235
Gene Annotation for Caenorhabditis elegans
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.71.gtf.gz
GTF
Callithrix_jacchus.C_jacchus3.2.1.71.gtf
Ensembl
Callithrix jacchus
9483
C_jacchus3.2.1
Gene Annotation for Callithrix jacchus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.71.gtf.gz
GTF
Canis_familiaris.CanFam3.1.71.gtf
Ensembl
Canis familiaris
9615
CanFam3.1
Gene Annotation for Canis familiaris
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.71.gtf.gz
GTF
Cavia_porcellus.cavPor3.71.gtf
Ensembl
Cavia porcellus
10141
cavPor3
Gene Annotation for Cavia porcellus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.71.gtf.gz
GTF
Choloepus_hoffmanni.choHof1.71.gtf
Ensembl
Choloepus hoffmanni
9358
choHof1
Gene Annotation for Choloepus hoffmanni
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.71.gtf.gz
GTF
Ciona_intestinalis.KH.71.gtf
Ensembl
Ciona intestinalis
7719
KH
Gene Annotation for Ciona intestinalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/ciona_intestinalis/Ciona_intestinalis.KH.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/ciona_intestinalis/Ciona_intestinalis.KH.71.gtf.gz
GTF
Ciona_savignyi.CSAV2.0.71.gtf
Ensembl
Ciona savignyi
51511
CSAV2.0
Gene Annotation for Ciona savignyi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.71.gtf.gz
GTF
Danio_rerio.Zv9.71.gtf
Ensembl
Danio rerio
7955
Zv9
Gene Annotation for Danio rerio
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/danio_rerio/Danio_rerio.Zv9.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/danio_rerio/Danio_rerio.Zv9.71.gtf.gz
GTF
Dasypus_novemcinctus.dasNov2.71.gtf
Ensembl
Dasypus novemcinctus
9361
dasNov2
Gene Annotation for Dasypus novemcinctus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.71.gtf.gz
GTF
Dipodomys_ordii.dipOrd1.71.gtf
Ensembl
Dipodomys ordii
10020
dipOrd1
Gene Annotation for Dipodomys ordii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.71.gtf.gz
GTF
Drosophila_melanogaster.BDGP5.71.gtf
Ensembl
Drosophila melanogaster
7227
BDGP5
Gene Annotation for Drosophila melanogaster
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.71.gtf.gz
GTF
Echinops_telfairi.TENREC.71.gtf
Ensembl
Echinops telfairi
9371
TENREC
Gene Annotation for Echinops telfairi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/echinops_telfairi/Echinops_telfairi.TENREC.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/echinops_telfairi/Echinops_telfairi.TENREC.71.gtf.gz
GTF
Equus_caballus.EquCab2.71.gtf
Ensembl
Equus caballus
9796
EquCab2
Gene Annotation for Equus caballus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/equus_caballus/Equus_caballus.EquCab2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/equus_caballus/Equus_caballus.EquCab2.71.gtf.gz
GTF
Erinaceus_europaeus.HEDGEHOG.71.gtf
Ensembl
Erinaceus europaeus
9365
HEDGEHOG
Gene Annotation for Erinaceus europaeus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.71.gtf.gz
GTF
Felis_catus.Felis_catus_6.2.71.gtf
Ensembl
Felis catus
9685
Felis_catus_6.2
Gene Annotation for Felis catus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/felis_catus/Felis_catus.Felis_catus_6.2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/felis_catus/Felis_catus.Felis_catus_6.2.71.gtf.gz
GTF
Gadus_morhua.gadMor1.71.gtf
Ensembl
Gadus morhua
8049
gadMor1
Gene Annotation for Gadus morhua
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/gadus_morhua/Gadus_morhua.gadMor1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/gadus_morhua/Gadus_morhua.gadMor1.71.gtf.gz
GTF
Gallus_gallus.Galgal4.71.gtf
Ensembl
Gallus gallus
9031
Galgal4
Gene Annotation for Gallus gallus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/gallus_gallus/Gallus_gallus.Galgal4.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/gallus_gallus/Gallus_gallus.Galgal4.71.gtf.gz
GTF
Gasterosteus_aculeatus.BROADS1.71.gtf
Ensembl
Gasterosteus aculeatus
69293
BROADS1
Gene Annotation for Gasterosteus aculeatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.71.gtf.gz
GTF
Gorilla_gorilla.gorGor3.1.71.gtf
Ensembl
Gorilla gorilla
9593
gorGor3.1
Gene Annotation for Gorilla gorilla
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.71.gtf.gz
GTF
Homo_sapiens.GRCh37.71.gtf
Ensembl
Homo sapiens
9606
GRCh37
Gene Annotation for Homo sapiens
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/homo_sapiens/Homo_sapiens.GRCh37.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/homo_sapiens/Homo_sapiens.GRCh37.71.gtf.gz
GTF
Ictidomys_tridecemlineatus.spetri2.71.gtf
Ensembl
Ictidomys tridecemlineatus
43179
spetri2
Gene Annotation for Ictidomys tridecemlineatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.71.gtf.gz
GTF
Latimeria_chalumnae.LatCha1.71.gtf
Ensembl
Latimeria chalumnae
7897
LatCha1
Gene Annotation for Latimeria chalumnae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.71.gtf.gz
GTF
Loxodonta_africana.loxAfr3.71.gtf
Ensembl
Loxodonta africana
9785
loxAfr3
Gene Annotation for Loxodonta africana
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.71.gtf.gz
GTF
Macaca_mulatta.MMUL_1.71.gtf
Ensembl
Macaca mulatta
9544
MMUL_1
Gene Annotation for Macaca mulatta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.71.gtf.gz
GTF
Macropus_eugenii.Meug_1.0.71.gtf
Ensembl
Macropus eugenii
9315
Meug_1.0
Gene Annotation for Macropus eugenii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.71.gtf.gz
GTF
Meleagris_gallopavo.UMD2.71.gtf
Ensembl
Meleagris gallopavo
9103
UMD2
Gene Annotation for Meleagris gallopavo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.71.gtf.gz
GTF
Microcebus_murinus.micMur1.71.gtf
Ensembl
Microcebus murinus
30608
micMur1
Gene Annotation for Microcebus murinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/microcebus_murinus/Microcebus_murinus.micMur1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/microcebus_murinus/Microcebus_murinus.micMur1.71.gtf.gz
GTF
Monodelphis_domestica.BROADO5.71.gtf
Ensembl
Monodelphis domestica
13616
BROADO5
Gene Annotation for Monodelphis domestica
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.71.gtf.gz
GTF
Mus_musculus.GRCm38.71.gtf
Ensembl
Mus musculus
10090
GRCm38
Gene Annotation for Mus musculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/mus_musculus/Mus_musculus.GRCm38.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/mus_musculus/Mus_musculus.GRCm38.71.gtf.gz
GTF
Mustela_putorius_furo.MusPutFur1.0.71.gtf
Ensembl
Mustela putorius furo
9669
MusPutFur1.0
Gene Annotation for Mustela putorius furo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.71.gtf.gz
GTF
Myotis_lucifugus.Myoluc2.0.71.gtf
Ensembl
Myotis lucifugus
59463
Myoluc2.0
Gene Annotation for Myotis lucifugus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.71.gtf.gz
GTF
Nomascus_leucogenys.Nleu1.0.71.gtf
Ensembl
Nomascus leucogenys
61853
Nleu1.0
Gene Annotation for Nomascus leucogenys
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.71.gtf.gz
GTF
Ochotona_princeps.pika.71.gtf
Ensembl
Ochotona princeps
9978
pika
Gene Annotation for Ochotona princeps
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/ochotona_princeps/Ochotona_princeps.pika.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/ochotona_princeps/Ochotona_princeps.pika.71.gtf.gz
GTF
Oreochromis_niloticus.Orenil1.0.71.gtf
Ensembl
Oreochromis niloticus
8128
Orenil1.0
Gene Annotation for Oreochromis niloticus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.71.gtf.gz
GTF
Ornithorhynchus_anatinus.OANA5.71.gtf
Ensembl
Ornithorhynchus anatinus
9258
OANA5
Gene Annotation for Ornithorhynchus anatinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.71.gtf.gz
GTF
Oryctolagus_cuniculus.oryCun2.71.gtf
Ensembl
Oryctolagus cuniculus
9986
oryCun2
Gene Annotation for Oryctolagus cuniculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.71.gtf.gz
GTF
Oryzias_latipes.MEDAKA1.71.gtf
Ensembl
Oryzias latipes
8090
MEDAKA1
Gene Annotation for Oryzias latipes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.71.gtf.gz
GTF
Otolemur_garnettii.OtoGar3.71.gtf
Ensembl
Otolemur garnettii
30611
OtoGar3
Gene Annotation for Otolemur garnettii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.71.gtf.gz
GTF
Pan_troglodytes.CHIMP2.1.4.71.gtf
Ensembl
Pan troglodytes
9598
CHIMP2.1.4
Gene Annotation for Pan troglodytes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.71.gtf.gz
GTF
Pelodiscus_sinensis.PelSin_1.0.71.gtf
Ensembl
Pelodiscus sinensis
13735
PelSin_1.0
Gene Annotation for Pelodiscus sinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.71.gtf.gz
GTF
Petromyzon_marinus.Pmarinus_7.0.71.gtf
Ensembl
Petromyzon marinus
7757
Pmarinus_7.0
Gene Annotation for Petromyzon marinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.71.gtf.gz
GTF
Pongo_abelii.PPYG2.71.gtf
Ensembl
Pongo abelii
9601
PPYG2
Gene Annotation for Pongo abelii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/pongo_abelii/Pongo_abelii.PPYG2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/pongo_abelii/Pongo_abelii.PPYG2.71.gtf.gz
GTF
Procavia_capensis.proCap1.71.gtf
Ensembl
Procavia capensis
9813
proCap1
Gene Annotation for Procavia capensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/procavia_capensis/Procavia_capensis.proCap1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/procavia_capensis/Procavia_capensis.proCap1.71.gtf.gz
GTF
Pteropus_vampyrus.pteVam1.71.gtf
Ensembl
Pteropus vampyrus
132908
pteVam1
Gene Annotation for Pteropus vampyrus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.71.gtf.gz
GTF
Rattus_norvegicus.Rnor_5.0.71.gtf
Ensembl
Rattus norvegicus
10116
Rnor_5.0
Gene Annotation for Rattus norvegicus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.71.gtf.gz
GTF
Saccharomyces_cerevisiae.EF4.71.gtf
Ensembl
Saccharomyces cerevisiae
4932
EF4
Gene Annotation for Saccharomyces cerevisiae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.71.gtf.gz
GTF
Sarcophilus_harrisii.DEVIL7.0.71.gtf
Ensembl
Sarcophilus harrisii
9305
DEVIL7.0
Gene Annotation for Sarcophilus harrisii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.71.gtf.gz
GTF
Sorex_araneus.COMMON_SHREW1.71.gtf
Ensembl
Sorex araneus
42254
COMMON_SHREW1
Gene Annotation for Sorex araneus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.71.gtf.gz
GTF
Sus_scrofa.Sscrofa10.2.71.gtf
Ensembl
Sus scrofa
9823
Sscrofa10.2
Gene Annotation for Sus scrofa
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.71.gtf.gz
GTF
Taeniopygia_guttata.taeGut3.2.4.71.gtf
Ensembl
Taeniopygia guttata
59729
taeGut3.2.4
Gene Annotation for Taeniopygia guttata
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-26
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.71.gtf.gz
GTF
Tarsius_syrichta.tarSyr1.71.gtf
Ensembl
Tarsius syrichta
1868482
tarSyr1
Gene Annotation for Tarsius syrichta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.71.gtf.gz
GTF
Tetraodon_nigroviridis.TETRAODON8.71.gtf
Ensembl
Tetraodon nigroviridis
99883
TETRAODON8
Gene Annotation for Tetraodon nigroviridis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.71.gtf.gz
GTF
Tupaia_belangeri.TREESHREW.71.gtf
Ensembl
Tupaia belangeri
37347
TREESHREW
Gene Annotation for Tupaia belangeri
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.71.gtf.gz
GTF
Tursiops_truncatus.turTru1.71.gtf
Ensembl
Tursiops truncatus
9739
turTru1
Gene Annotation for Tursiops truncatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.71.gtf.gz
GTF
Vicugna_pacos.vicPac1.71.gtf
Ensembl
Vicugna pacos
30538
vicPac1
Gene Annotation for Vicugna pacos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.71.gtf.gz
GTF
Xenopus_tropicalis.JGI_4.2.71.gtf
Ensembl
Xenopus tropicalis
8364
JGI_4.2
Gene Annotation for Xenopus tropicalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.71.gtf.gz
GTF
Xiphophorus_maculatus.Xipmac4.4.2.71.gtf
Ensembl
Xiphophorus maculatus
8083
Xipmac4.4.2
Gene Annotation for Xiphophorus maculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.71.gtf.gz
GTF
Ailuropoda_melanoleuca.ailMel1.72.gtf
Ensembl
Ailuropoda melanoleuca
9646
ailMel1
Gene Annotation for Ailuropoda melanoleuca
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.72.gtf.gz
GTF
Anolis_carolinensis.AnoCar2.0.72.gtf
Ensembl
Anolis carolinensis
28377
AnoCar2.0
Gene Annotation for Anolis carolinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.72.gtf.gz
GTF
Bos_taurus.UMD3.1.72.gtf
Ensembl
Bos taurus
9913
UMD3.1
Gene Annotation for Bos taurus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/bos_taurus/Bos_taurus.UMD3.1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/bos_taurus/Bos_taurus.UMD3.1.72.gtf.gz
GTF
Caenorhabditis_elegans.WBcel235.72.gtf
Ensembl
Caenorhabditis elegans
6239
WBcel235
Gene Annotation for Caenorhabditis elegans
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.72.gtf.gz
GTF
Callithrix_jacchus.C_jacchus3.2.1.72.gtf
Ensembl
Callithrix jacchus
9483
C_jacchus3.2.1
Gene Annotation for Callithrix jacchus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.72.gtf.gz
GTF
Canis_familiaris.CanFam3.1.72.gtf
Ensembl
Canis familiaris
9615
CanFam3.1
Gene Annotation for Canis familiaris
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.72.gtf.gz
GTF
Cavia_porcellus.cavPor3.72.gtf
Ensembl
Cavia porcellus
10141
cavPor3
Gene Annotation for Cavia porcellus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.72.gtf.gz
GTF
Choloepus_hoffmanni.choHof1.72.gtf
Ensembl
Choloepus hoffmanni
9358
choHof1
Gene Annotation for Choloepus hoffmanni
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.72.gtf.gz
GTF
Ciona_intestinalis.KH.72.gtf
Ensembl
Ciona intestinalis
7719
KH
Gene Annotation for Ciona intestinalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/ciona_intestinalis/Ciona_intestinalis.KH.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/ciona_intestinalis/Ciona_intestinalis.KH.72.gtf.gz
GTF
Ciona_savignyi.CSAV2.0.72.gtf
Ensembl
Ciona savignyi
51511
CSAV2.0
Gene Annotation for Ciona savignyi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.72.gtf.gz
GTF
Danio_rerio.Zv9.72.gtf
Ensembl
Danio rerio
7955
Zv9
Gene Annotation for Danio rerio
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/danio_rerio/Danio_rerio.Zv9.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/danio_rerio/Danio_rerio.Zv9.72.gtf.gz
GTF
Dasypus_novemcinctus.dasNov2.72.gtf
Ensembl
Dasypus novemcinctus
9361
dasNov2
Gene Annotation for Dasypus novemcinctus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.72.gtf.gz
GTF
Dipodomys_ordii.dipOrd1.72.gtf
Ensembl
Dipodomys ordii
10020
dipOrd1
Gene Annotation for Dipodomys ordii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.72.gtf.gz
GTF
Drosophila_melanogaster.BDGP5.72.gtf
Ensembl
Drosophila melanogaster
7227
BDGP5
Gene Annotation for Drosophila melanogaster
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.72.gtf.gz
GTF
Echinops_telfairi.TENREC.72.gtf
Ensembl
Echinops telfairi
9371
TENREC
Gene Annotation for Echinops telfairi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/echinops_telfairi/Echinops_telfairi.TENREC.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/echinops_telfairi/Echinops_telfairi.TENREC.72.gtf.gz
GTF
Equus_caballus.EquCab2.72.gtf
Ensembl
Equus caballus
9796
EquCab2
Gene Annotation for Equus caballus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/equus_caballus/Equus_caballus.EquCab2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/equus_caballus/Equus_caballus.EquCab2.72.gtf.gz
GTF
Erinaceus_europaeus.HEDGEHOG.72.gtf
Ensembl
Erinaceus europaeus
9365
HEDGEHOG
Gene Annotation for Erinaceus europaeus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.72.gtf.gz
GTF
Felis_catus.Felis_catus_6.2.72.gtf
Ensembl
Felis catus
9685
Felis_catus_6.2
Gene Annotation for Felis catus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/felis_catus/Felis_catus.Felis_catus_6.2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/felis_catus/Felis_catus.Felis_catus_6.2.72.gtf.gz
GTF
Gadus_morhua.gadMor1.72.gtf
Ensembl
Gadus morhua
8049
gadMor1
Gene Annotation for Gadus morhua
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/gadus_morhua/Gadus_morhua.gadMor1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/gadus_morhua/Gadus_morhua.gadMor1.72.gtf.gz
GTF
Gallus_gallus.Galgal4.72.gtf
Ensembl
Gallus gallus
9031
Galgal4
Gene Annotation for Gallus gallus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/gallus_gallus/Gallus_gallus.Galgal4.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/gallus_gallus/Gallus_gallus.Galgal4.72.gtf.gz
GTF
Gasterosteus_aculeatus.BROADS1.72.gtf
Ensembl
Gasterosteus aculeatus
69293
BROADS1
Gene Annotation for Gasterosteus aculeatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.72.gtf.gz
GTF
Gorilla_gorilla.gorGor3.1.72.gtf
Ensembl
Gorilla gorilla
9593
gorGor3.1
Gene Annotation for Gorilla gorilla
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.72.gtf.gz
GTF
Homo_sapiens.GRCh37.72.gtf
Ensembl
Homo sapiens
9606
GRCh37
Gene Annotation for Homo sapiens
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/homo_sapiens/Homo_sapiens.GRCh37.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/homo_sapiens/Homo_sapiens.GRCh37.72.gtf.gz
GTF
Ictidomys_tridecemlineatus.spetri2.72.gtf
Ensembl
Ictidomys tridecemlineatus
43179
spetri2
Gene Annotation for Ictidomys tridecemlineatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.72.gtf.gz
GTF
Latimeria_chalumnae.LatCha1.72.gtf
Ensembl
Latimeria chalumnae
7897
LatCha1
Gene Annotation for Latimeria chalumnae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.72.gtf.gz
GTF
Loxodonta_africana.loxAfr3.72.gtf
Ensembl
Loxodonta africana
9785
loxAfr3
Gene Annotation for Loxodonta africana
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.72.gtf.gz
GTF
Macaca_mulatta.MMUL_1.72.gtf
Ensembl
Macaca mulatta
9544
MMUL_1
Gene Annotation for Macaca mulatta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-06-27
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.72.gtf.gz
GTF
Takifugu_rubripes.FUGU4.71.gtf
Ensembl
Takifugu rubripes
31033
FUGU4
Gene Annotation for Takifugu rubripes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-71/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.71.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-71/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.71.gtf.gz
GTF
Macropus_eugenii.Meug_1.0.72.gtf
Ensembl
Macropus eugenii
9315
Meug_1.0
Gene Annotation for Macropus eugenii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.72.gtf.gz
GTF
Meleagris_gallopavo.UMD2.72.gtf
Ensembl
Meleagris gallopavo
9103
UMD2
Gene Annotation for Meleagris gallopavo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.72.gtf.gz
GTF
Microcebus_murinus.micMur1.72.gtf
Ensembl
Microcebus murinus
30608
micMur1
Gene Annotation for Microcebus murinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/microcebus_murinus/Microcebus_murinus.micMur1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/microcebus_murinus/Microcebus_murinus.micMur1.72.gtf.gz
GTF
Monodelphis_domestica.BROADO5.72.gtf
Ensembl
Monodelphis domestica
13616
BROADO5
Gene Annotation for Monodelphis domestica
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.72.gtf.gz
GTF
Mus_musculus.GRCm38.72.gtf
Ensembl
Mus musculus
10090
GRCm38
Gene Annotation for Mus musculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/mus_musculus/Mus_musculus.GRCm38.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/mus_musculus/Mus_musculus.GRCm38.72.gtf.gz
GTF
Mustela_putorius_furo.MusPutFur1.0.72.gtf
Ensembl
Mustela putorius furo
9669
MusPutFur1.0
Gene Annotation for Mustela putorius furo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.72.gtf.gz
GTF
Myotis_lucifugus.Myoluc2.0.72.gtf
Ensembl
Myotis lucifugus
59463
Myoluc2.0
Gene Annotation for Myotis lucifugus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.72.gtf.gz
GTF
Nomascus_leucogenys.Nleu1.0.72.gtf
Ensembl
Nomascus leucogenys
61853
Nleu1.0
Gene Annotation for Nomascus leucogenys
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.72.gtf.gz
GTF
Ochotona_princeps.pika.72.gtf
Ensembl
Ochotona princeps
9978
pika
Gene Annotation for Ochotona princeps
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/ochotona_princeps/Ochotona_princeps.pika.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/ochotona_princeps/Ochotona_princeps.pika.72.gtf.gz
GTF
Oreochromis_niloticus.Orenil1.0.72.gtf
Ensembl
Oreochromis niloticus
8128
Orenil1.0
Gene Annotation for Oreochromis niloticus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.72.gtf.gz
GTF
Ornithorhynchus_anatinus.OANA5.72.gtf
Ensembl
Ornithorhynchus anatinus
9258
OANA5
Gene Annotation for Ornithorhynchus anatinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.72.gtf.gz
GTF
Oryctolagus_cuniculus.oryCun2.72.gtf
Ensembl
Oryctolagus cuniculus
9986
oryCun2
Gene Annotation for Oryctolagus cuniculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.oryCun2.72.gtf.gz
GTF
Oryzias_latipes.MEDAKA1.72.gtf
Ensembl
Oryzias latipes
8090
MEDAKA1
Gene Annotation for Oryzias latipes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.72.gtf.gz
GTF
Otolemur_garnettii.OtoGar3.72.gtf
Ensembl
Otolemur garnettii
30611
OtoGar3
Gene Annotation for Otolemur garnettii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.72.gtf.gz
GTF
Pan_troglodytes.CHIMP2.1.4.72.gtf
Ensembl
Pan troglodytes
9598
CHIMP2.1.4
Gene Annotation for Pan troglodytes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.72.gtf.gz
GTF
Pelodiscus_sinensis.PelSin_1.0.72.gtf
Ensembl
Pelodiscus sinensis
13735
PelSin_1.0
Gene Annotation for Pelodiscus sinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.72.gtf.gz
GTF
Petromyzon_marinus.Pmarinus_7.0.72.gtf
Ensembl
Petromyzon marinus
7757
Pmarinus_7.0
Gene Annotation for Petromyzon marinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.72.gtf.gz
GTF
Pongo_abelii.PPYG2.72.gtf
Ensembl
Pongo abelii
9601
PPYG2
Gene Annotation for Pongo abelii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/pongo_abelii/Pongo_abelii.PPYG2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/pongo_abelii/Pongo_abelii.PPYG2.72.gtf.gz
GTF
Procavia_capensis.proCap1.72.gtf
Ensembl
Procavia capensis
9813
proCap1
Gene Annotation for Procavia capensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/procavia_capensis/Procavia_capensis.proCap1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/procavia_capensis/Procavia_capensis.proCap1.72.gtf.gz
GTF
Pteropus_vampyrus.pteVam1.72.gtf
Ensembl
Pteropus vampyrus
132908
pteVam1
Gene Annotation for Pteropus vampyrus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.72.gtf.gz
GTF
Rattus_norvegicus.Rnor_5.0.72.gtf
Ensembl
Rattus norvegicus
10116
Rnor_5.0
Gene Annotation for Rattus norvegicus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.72.gtf.gz
GTF
Saccharomyces_cerevisiae.EF4.72.gtf
Ensembl
Saccharomyces cerevisiae
4932
EF4
Gene Annotation for Saccharomyces cerevisiae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.72.gtf.gz
GTF
Sarcophilus_harrisii.DEVIL7.0.72.gtf
Ensembl
Sarcophilus harrisii
9305
DEVIL7.0
Gene Annotation for Sarcophilus harrisii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.72.gtf.gz
GTF
Sorex_araneus.COMMON_SHREW1.72.gtf
Ensembl
Sorex araneus
42254
COMMON_SHREW1
Gene Annotation for Sorex araneus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.72.gtf.gz
GTF
Sus_scrofa.Sscrofa10.2.72.gtf
Ensembl
Sus scrofa
9823
Sscrofa10.2
Gene Annotation for Sus scrofa
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.72.gtf.gz
GTF
Taeniopygia_guttata.taeGut3.2.4.72.gtf
Ensembl
Taeniopygia guttata
59729
taeGut3.2.4
Gene Annotation for Taeniopygia guttata
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.72.gtf.gz
GTF
Takifugu_rubripes.FUGU4.72.gtf
Ensembl
Takifugu rubripes
31033
FUGU4
Gene Annotation for Takifugu rubripes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.72.gtf.gz
GTF
Tarsius_syrichta.tarSyr1.72.gtf
Ensembl
Tarsius syrichta
1868482
tarSyr1
Gene Annotation for Tarsius syrichta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.72.gtf.gz
GTF
Tetraodon_nigroviridis.TETRAODON8.72.gtf
Ensembl
Tetraodon nigroviridis
99883
TETRAODON8
Gene Annotation for Tetraodon nigroviridis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.72.gtf.gz
GTF
Tupaia_belangeri.TREESHREW.72.gtf
Ensembl
Tupaia belangeri
37347
TREESHREW
Gene Annotation for Tupaia belangeri
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.72.gtf.gz
GTF
Tursiops_truncatus.turTru1.72.gtf
Ensembl
Tursiops truncatus
9739
turTru1
Gene Annotation for Tursiops truncatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.72.gtf.gz
GTF
Vicugna_pacos.vicPac1.72.gtf
Ensembl
Vicugna pacos
30538
vicPac1
Gene Annotation for Vicugna pacos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.72.gtf.gz
GTF
Xenopus_tropicalis.JGI_4.2.72.gtf
Ensembl
Xenopus tropicalis
8364
JGI_4.2
Gene Annotation for Xenopus tropicalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.72.gtf.gz
GTF
Xiphophorus_maculatus.Xipmac4.4.2.72.gtf
Ensembl
Xiphophorus maculatus
8083
Xipmac4.4.2
Gene Annotation for Xiphophorus maculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-72/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.72.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-72/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.72.gtf.gz
GTF
Ailuropoda_melanoleuca.ailMel1.73.gtf
Ensembl
Ailuropoda melanoleuca
9646
ailMel1
Gene Annotation for Ailuropoda melanoleuca
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.73.gtf.gz
GTF
Anas_platyrhynchos.BGI_duck_1.0.73.gtf
Ensembl
Anas platyrhynchos
8839
BGI_duck_1.0
Gene Annotation for Anas platyrhynchos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/anas_platyrhynchos/Anas_platyrhynchos.BGI_duck_1.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/anas_platyrhynchos/Anas_platyrhynchos.BGI_duck_1.0.73.gtf.gz
GTF
Anolis_carolinensis.AnoCar2.0.73.gtf
Ensembl
Anolis carolinensis
28377
AnoCar2.0
Gene Annotation for Anolis carolinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.73.gtf.gz
GTF
Bos_taurus.UMD3.1.73.gtf
Ensembl
Bos taurus
9913
UMD3.1
Gene Annotation for Bos taurus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/bos_taurus/Bos_taurus.UMD3.1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/bos_taurus/Bos_taurus.UMD3.1.73.gtf.gz
GTF
Caenorhabditis_elegans.WBcel235.73.gtf
Ensembl
Caenorhabditis elegans
6239
WBcel235
Gene Annotation for Caenorhabditis elegans
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.73.gtf.gz
GTF
Callithrix_jacchus.C_jacchus3.2.1.73.gtf
Ensembl
Callithrix jacchus
9483
C_jacchus3.2.1
Gene Annotation for Callithrix jacchus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.73.gtf.gz
GTF
Canis_familiaris.CanFam3.1.73.gtf
Ensembl
Canis familiaris
9615
CanFam3.1
Gene Annotation for Canis familiaris
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.73.gtf.gz
GTF
Cavia_porcellus.cavPor3.73.gtf
Ensembl
Cavia porcellus
10141
cavPor3
Gene Annotation for Cavia porcellus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.73.gtf.gz
GTF
Choloepus_hoffmanni.choHof1.73.gtf
Ensembl
Choloepus hoffmanni
9358
choHof1
Gene Annotation for Choloepus hoffmanni
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.73.gtf.gz
GTF
Ciona_intestinalis.KH.73.gtf
Ensembl
Ciona intestinalis
7719
KH
Gene Annotation for Ciona intestinalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ciona_intestinalis/Ciona_intestinalis.KH.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ciona_intestinalis/Ciona_intestinalis.KH.73.gtf.gz
GTF
Ciona_savignyi.CSAV2.0.73.gtf
Ensembl
Ciona savignyi
51511
CSAV2.0
Gene Annotation for Ciona savignyi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.73.gtf.gz
GTF
Danio_rerio.Zv9.73.gtf
Ensembl
Danio rerio
7955
Zv9
Gene Annotation for Danio rerio
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/danio_rerio/Danio_rerio.Zv9.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/danio_rerio/Danio_rerio.Zv9.73.gtf.gz
GTF
Dasypus_novemcinctus.dasNov2.73.gtf
Ensembl
Dasypus novemcinctus
9361
dasNov2
Gene Annotation for Dasypus novemcinctus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.dasNov2.73.gtf.gz
GTF
Dipodomys_ordii.dipOrd1.73.gtf
Ensembl
Dipodomys ordii
10020
dipOrd1
Gene Annotation for Dipodomys ordii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.73.gtf.gz
GTF
Drosophila_melanogaster.BDGP5.73.gtf
Ensembl
Drosophila melanogaster
7227
BDGP5
Gene Annotation for Drosophila melanogaster
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.73.gtf.gz
GTF
Echinops_telfairi.TENREC.73.gtf
Ensembl
Echinops telfairi
9371
TENREC
Gene Annotation for Echinops telfairi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/echinops_telfairi/Echinops_telfairi.TENREC.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/echinops_telfairi/Echinops_telfairi.TENREC.73.gtf.gz
GTF
Equus_caballus.EquCab2.73.gtf
Ensembl
Equus caballus
9796
EquCab2
Gene Annotation for Equus caballus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/equus_caballus/Equus_caballus.EquCab2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/equus_caballus/Equus_caballus.EquCab2.73.gtf.gz
GTF
Erinaceus_europaeus.HEDGEHOG.73.gtf
Ensembl
Erinaceus europaeus
9365
HEDGEHOG
Gene Annotation for Erinaceus europaeus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.73.gtf.gz
GTF
Felis_catus.Felis_catus_6.2.73.gtf
Ensembl
Felis catus
9685
Felis_catus_6.2
Gene Annotation for Felis catus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/felis_catus/Felis_catus.Felis_catus_6.2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/felis_catus/Felis_catus.Felis_catus_6.2.73.gtf.gz
GTF
Ficedula_albicollis.FicAlb_1.4.73.gtf
Ensembl
Ficedula albicollis
59894
FicAlb_1.4
Gene Annotation for Ficedula albicollis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ficedula_albicollis/Ficedula_albicollis.FicAlb_1.4.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ficedula_albicollis/Ficedula_albicollis.FicAlb_1.4.73.gtf.gz
GTF
Gadus_morhua.gadMor1.73.gtf
Ensembl
Gadus morhua
8049
gadMor1
Gene Annotation for Gadus morhua
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/gadus_morhua/Gadus_morhua.gadMor1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/gadus_morhua/Gadus_morhua.gadMor1.73.gtf.gz
GTF
Gallus_gallus.Galgal4.73.gtf
Ensembl
Gallus gallus
9031
Galgal4
Gene Annotation for Gallus gallus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/gallus_gallus/Gallus_gallus.Galgal4.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/gallus_gallus/Gallus_gallus.Galgal4.73.gtf.gz
GTF
Gasterosteus_aculeatus.BROADS1.73.gtf
Ensembl
Gasterosteus aculeatus
69293
BROADS1
Gene Annotation for Gasterosteus aculeatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.73.gtf.gz
GTF
Gorilla_gorilla.gorGor3.1.73.gtf
Ensembl
Gorilla gorilla
9593
gorGor3.1
Gene Annotation for Gorilla gorilla
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.73.gtf.gz
GTF
Homo_sapiens.GRCh37.73.gtf
Ensembl
Homo sapiens
9606
GRCh37
Gene Annotation for Homo sapiens
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/homo_sapiens/Homo_sapiens.GRCh37.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/homo_sapiens/Homo_sapiens.GRCh37.73.gtf.gz
GTF
Ictidomys_tridecemlineatus.spetri2.73.gtf
Ensembl
Ictidomys tridecemlineatus
43179
spetri2
Gene Annotation for Ictidomys tridecemlineatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.73.gtf.gz
GTF
Latimeria_chalumnae.LatCha1.73.gtf
Ensembl
Latimeria chalumnae
7897
LatCha1
Gene Annotation for Latimeria chalumnae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.73.gtf.gz
GTF
Loxodonta_africana.loxAfr3.73.gtf
Ensembl
Loxodonta africana
9785
loxAfr3
Gene Annotation for Loxodonta africana
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.73.gtf.gz
GTF
Macaca_mulatta.MMUL_1.73.gtf
Ensembl
Macaca mulatta
9544
MMUL_1
Gene Annotation for Macaca mulatta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.73.gtf.gz
GTF
Macropus_eugenii.Meug_1.0.73.gtf
Ensembl
Macropus eugenii
9315
Meug_1.0
Gene Annotation for Macropus eugenii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.73.gtf.gz
GTF
Meleagris_gallopavo.UMD2.73.gtf
Ensembl
Meleagris gallopavo
9103
UMD2
Gene Annotation for Meleagris gallopavo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.73.gtf.gz
GTF
Microcebus_murinus.micMur1.73.gtf
Ensembl
Microcebus murinus
30608
micMur1
Gene Annotation for Microcebus murinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/microcebus_murinus/Microcebus_murinus.micMur1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/microcebus_murinus/Microcebus_murinus.micMur1.73.gtf.gz
GTF
Monodelphis_domestica.BROADO5.73.gtf
Ensembl
Monodelphis domestica
13616
BROADO5
Gene Annotation for Monodelphis domestica
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.73.gtf.gz
GTF
Mus_musculus.GRCm38.73.gtf
Ensembl
Mus musculus
10090
GRCm38
Gene Annotation for Mus musculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/mus_musculus/Mus_musculus.GRCm38.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/mus_musculus/Mus_musculus.GRCm38.73.gtf.gz
GTF
Mustela_putorius_furo.MusPutFur1.0.73.gtf
Ensembl
Mustela putorius furo
9669
MusPutFur1.0
Gene Annotation for Mustela putorius furo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.73.gtf.gz
GTF
Myotis_lucifugus.Myoluc2.0.73.gtf
Ensembl
Myotis lucifugus
59463
Myoluc2.0
Gene Annotation for Myotis lucifugus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.73.gtf.gz
GTF
Nomascus_leucogenys.Nleu1.0.73.gtf
Ensembl
Nomascus leucogenys
61853
Nleu1.0
Gene Annotation for Nomascus leucogenys
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.73.gtf.gz
GTF
Ochotona_princeps.pika.73.gtf
Ensembl
Ochotona princeps
9978
pika
Gene Annotation for Ochotona princeps
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ochotona_princeps/Ochotona_princeps.pika.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ochotona_princeps/Ochotona_princeps.pika.73.gtf.gz
GTF
Oreochromis_niloticus.Orenil1.0.73.gtf
Ensembl
Oreochromis niloticus
8128
Orenil1.0
Gene Annotation for Oreochromis niloticus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.73.gtf.gz
GTF
Ornithorhynchus_anatinus.OANA5.73.gtf
Ensembl
Ornithorhynchus anatinus
9258
OANA5
Gene Annotation for Ornithorhynchus anatinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.73.gtf.gz
GTF
Oryctolagus_cuniculus.OryCun2.0.73.gtf
Ensembl
Oryctolagus cuniculus
9986
OryCun2.0
Gene Annotation for Oryctolagus cuniculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.OryCun2.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.OryCun2.0.73.gtf.gz
GTF
Oryzias_latipes.MEDAKA1.73.gtf
Ensembl
Oryzias latipes
8090
MEDAKA1
Gene Annotation for Oryzias latipes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.73.gtf.gz
GTF
Otolemur_garnettii.OtoGar3.73.gtf
Ensembl
Otolemur garnettii
30611
OtoGar3
Gene Annotation for Otolemur garnettii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.73.gtf.gz
GTF
Pan_troglodytes.CHIMP2.1.4.73.gtf
Ensembl
Pan troglodytes
9598
CHIMP2.1.4
Gene Annotation for Pan troglodytes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.73.gtf.gz
GTF
Pelodiscus_sinensis.PelSin_1.0.73.gtf
Ensembl
Pelodiscus sinensis
13735
PelSin_1.0
Gene Annotation for Pelodiscus sinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.73.gtf.gz
GTF
Petromyzon_marinus.Pmarinus_7.0.73.gtf
Ensembl
Petromyzon marinus
7757
Pmarinus_7.0
Gene Annotation for Petromyzon marinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.73.gtf.gz
GTF
Pongo_abelii.PPYG2.73.gtf
Ensembl
Pongo abelii
9601
PPYG2
Gene Annotation for Pongo abelii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/pongo_abelii/Pongo_abelii.PPYG2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/pongo_abelii/Pongo_abelii.PPYG2.73.gtf.gz
GTF
Procavia_capensis.proCap1.73.gtf
Ensembl
Procavia capensis
9813
proCap1
Gene Annotation for Procavia capensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/procavia_capensis/Procavia_capensis.proCap1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/procavia_capensis/Procavia_capensis.proCap1.73.gtf.gz
GTF
Pteropus_vampyrus.pteVam1.73.gtf
Ensembl
Pteropus vampyrus
132908
pteVam1
Gene Annotation for Pteropus vampyrus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.73.gtf.gz
GTF
Rattus_norvegicus.Rnor_5.0.73.gtf
Ensembl
Rattus norvegicus
10116
Rnor_5.0
Gene Annotation for Rattus norvegicus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.73.gtf.gz
GTF
Saccharomyces_cerevisiae.EF4.73.gtf
Ensembl
Saccharomyces cerevisiae
4932
EF4
Gene Annotation for Saccharomyces cerevisiae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.73.gtf.gz
GTF
Sarcophilus_harrisii.DEVIL7.0.73.gtf
Ensembl
Sarcophilus harrisii
9305
DEVIL7.0
Gene Annotation for Sarcophilus harrisii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.73.gtf.gz
GTF
Sorex_araneus.COMMON_SHREW1.73.gtf
Ensembl
Sorex araneus
42254
COMMON_SHREW1
Gene Annotation for Sorex araneus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.73.gtf.gz
GTF
Sus_scrofa.Sscrofa10.2.73.gtf
Ensembl
Sus scrofa
9823
Sscrofa10.2
Gene Annotation for Sus scrofa
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.73.gtf.gz
GTF
Taeniopygia_guttata.taeGut3.2.4.73.gtf
Ensembl
Taeniopygia guttata
59729
taeGut3.2.4
Gene Annotation for Taeniopygia guttata
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.73.gtf.gz
GTF
Takifugu_rubripes.FUGU4.73.gtf
Ensembl
Takifugu rubripes
31033
FUGU4
Gene Annotation for Takifugu rubripes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.73.gtf.gz
GTF
Tarsius_syrichta.tarSyr1.73.gtf
Ensembl
Tarsius syrichta
1868482
tarSyr1
Gene Annotation for Tarsius syrichta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.73.gtf.gz
GTF
Tetraodon_nigroviridis.TETRAODON8.73.gtf
Ensembl
Tetraodon nigroviridis
99883
TETRAODON8
Gene Annotation for Tetraodon nigroviridis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.73.gtf.gz
GTF
Tupaia_belangeri.TREESHREW.73.gtf
Ensembl
Tupaia belangeri
37347
TREESHREW
Gene Annotation for Tupaia belangeri
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.73.gtf.gz
GTF
Tursiops_truncatus.turTru1.73.gtf
Ensembl
Tursiops truncatus
9739
turTru1
Gene Annotation for Tursiops truncatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.73.gtf.gz
GTF
Vicugna_pacos.vicPac1.73.gtf
Ensembl
Vicugna pacos
30538
vicPac1
Gene Annotation for Vicugna pacos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.73.gtf.gz
GTF
Xenopus_tropicalis.JGI_4.2.73.gtf
Ensembl
Xenopus tropicalis
8364
JGI_4.2
Gene Annotation for Xenopus tropicalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.73.gtf.gz
GTF
Xiphophorus_maculatus.Xipmac4.4.2.73.gtf
Ensembl
Xiphophorus maculatus
8083
Xipmac4.4.2
Gene Annotation for Xiphophorus maculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-10-29
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-73/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.73.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-73/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.73.gtf.gz
GTF
Ailuropoda_melanoleuca.ailMel1.74.gtf
Ensembl
Ailuropoda melanoleuca
9646
ailMel1
Gene Annotation for Ailuropoda melanoleuca
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.74.gtf.gz
GTF
Anas_platyrhynchos.BGI_duck_1.0.74.gtf
Ensembl
Anas platyrhynchos
8839
BGI_duck_1.0
Gene Annotation for Anas platyrhynchos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/anas_platyrhynchos/Anas_platyrhynchos.BGI_duck_1.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/anas_platyrhynchos/Anas_platyrhynchos.BGI_duck_1.0.74.gtf.gz
GTF
Anolis_carolinensis.AnoCar2.0.74.gtf
Ensembl
Anolis carolinensis
28377
AnoCar2.0
Gene Annotation for Anolis carolinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.74.gtf.gz
GTF
Astyanax_mexicanus.AstMex102.74.gtf
Ensembl
Astyanax mexicanus
7994
AstMex102
Gene Annotation for Astyanax mexicanus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/astyanax_mexicanus/Astyanax_mexicanus.AstMex102.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/astyanax_mexicanus/Astyanax_mexicanus.AstMex102.74.gtf.gz
GTF
Bos_taurus.UMD3.1.74.gtf
Ensembl
Bos taurus
9913
UMD3.1
Gene Annotation for Bos taurus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/bos_taurus/Bos_taurus.UMD3.1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/bos_taurus/Bos_taurus.UMD3.1.74.gtf.gz
GTF
Caenorhabditis_elegans.WBcel235.74.gtf
Ensembl
Caenorhabditis elegans
6239
WBcel235
Gene Annotation for Caenorhabditis elegans
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.74.gtf.gz
GTF
Callithrix_jacchus.C_jacchus3.2.1.74.gtf
Ensembl
Callithrix jacchus
9483
C_jacchus3.2.1
Gene Annotation for Callithrix jacchus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/callithrix_jacchus/Callithrix_jacchus.C_jacchus3.2.1.74.gtf.gz
GTF
Canis_familiaris.CanFam3.1.74.gtf
Ensembl
Canis familiaris
9615
CanFam3.1
Gene Annotation for Canis familiaris
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/canis_familiaris/Canis_familiaris.CanFam3.1.74.gtf.gz
GTF
Cavia_porcellus.cavPor3.74.gtf
Ensembl
Cavia porcellus
10141
cavPor3
Gene Annotation for Cavia porcellus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/cavia_porcellus/Cavia_porcellus.cavPor3.74.gtf.gz
GTF
Choloepus_hoffmanni.choHof1.74.gtf
Ensembl
Choloepus hoffmanni
9358
choHof1
Gene Annotation for Choloepus hoffmanni
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/choloepus_hoffmanni/Choloepus_hoffmanni.choHof1.74.gtf.gz
GTF
Ciona_intestinalis.KH.74.gtf
Ensembl
Ciona intestinalis
7719
KH
Gene Annotation for Ciona intestinalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ciona_intestinalis/Ciona_intestinalis.KH.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ciona_intestinalis/Ciona_intestinalis.KH.74.gtf.gz
GTF
Ciona_savignyi.CSAV2.0.74.gtf
Ensembl
Ciona savignyi
51511
CSAV2.0
Gene Annotation for Ciona savignyi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ciona_savignyi/Ciona_savignyi.CSAV2.0.74.gtf.gz
GTF
Danio_rerio.Zv9.74.gtf
Ensembl
Danio rerio
7955
Zv9
Gene Annotation for Danio rerio
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/danio_rerio/Danio_rerio.Zv9.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/danio_rerio/Danio_rerio.Zv9.74.gtf.gz
GTF
Dasypus_novemcinctus.Dasnov3.0.74.gtf
Ensembl
Dasypus novemcinctus
9361
Dasnov3.0
Gene Annotation for Dasypus novemcinctus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.Dasnov3.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/dasypus_novemcinctus/Dasypus_novemcinctus.Dasnov3.0.74.gtf.gz
GTF
Dipodomys_ordii.dipOrd1.74.gtf
Ensembl
Dipodomys ordii
10020
dipOrd1
Gene Annotation for Dipodomys ordii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/dipodomys_ordii/Dipodomys_ordii.dipOrd1.74.gtf.gz
GTF
Drosophila_melanogaster.BDGP5.74.gtf
Ensembl
Drosophila melanogaster
7227
BDGP5
Gene Annotation for Drosophila melanogaster
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.74.gtf.gz
GTF
Echinops_telfairi.TENREC.74.gtf
Ensembl
Echinops telfairi
9371
TENREC
Gene Annotation for Echinops telfairi
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/echinops_telfairi/Echinops_telfairi.TENREC.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/echinops_telfairi/Echinops_telfairi.TENREC.74.gtf.gz
GTF
Equus_caballus.EquCab2.74.gtf
Ensembl
Equus caballus
9796
EquCab2
Gene Annotation for Equus caballus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/equus_caballus/Equus_caballus.EquCab2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/equus_caballus/Equus_caballus.EquCab2.74.gtf.gz
GTF
Erinaceus_europaeus.HEDGEHOG.74.gtf
Ensembl
Erinaceus europaeus
9365
HEDGEHOG
Gene Annotation for Erinaceus europaeus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/erinaceus_europaeus/Erinaceus_europaeus.HEDGEHOG.74.gtf.gz
GTF
Felis_catus.Felis_catus_6.2.74.gtf
Ensembl
Felis catus
9685
Felis_catus_6.2
Gene Annotation for Felis catus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/felis_catus/Felis_catus.Felis_catus_6.2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/felis_catus/Felis_catus.Felis_catus_6.2.74.gtf.gz
GTF
Ficedula_albicollis.FicAlb_1.4.74.gtf
Ensembl
Ficedula albicollis
59894
FicAlb_1.4
Gene Annotation for Ficedula albicollis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ficedula_albicollis/Ficedula_albicollis.FicAlb_1.4.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ficedula_albicollis/Ficedula_albicollis.FicAlb_1.4.74.gtf.gz
GTF
Gadus_morhua.gadMor1.74.gtf
Ensembl
Gadus morhua
8049
gadMor1
Gene Annotation for Gadus morhua
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/gadus_morhua/Gadus_morhua.gadMor1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/gadus_morhua/Gadus_morhua.gadMor1.74.gtf.gz
GTF
Gallus_gallus.Galgal4.74.gtf
Ensembl
Gallus gallus
9031
Galgal4
Gene Annotation for Gallus gallus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/gallus_gallus/Gallus_gallus.Galgal4.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/gallus_gallus/Gallus_gallus.Galgal4.74.gtf.gz
GTF
Gasterosteus_aculeatus.BROADS1.74.gtf
Ensembl
Gasterosteus aculeatus
69293
BROADS1
Gene Annotation for Gasterosteus aculeatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/gasterosteus_aculeatus/Gasterosteus_aculeatus.BROADS1.74.gtf.gz
GTF
Gorilla_gorilla.gorGor3.1.74.gtf
Ensembl
Gorilla gorilla
9593
gorGor3.1
Gene Annotation for Gorilla gorilla
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/gorilla_gorilla/Gorilla_gorilla.gorGor3.1.74.gtf.gz
GTF
Homo_sapiens.GRCh37.74.gtf
Ensembl
Homo sapiens
9606
GRCh37
Gene Annotation for Homo sapiens
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/homo_sapiens/Homo_sapiens.GRCh37.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/homo_sapiens/Homo_sapiens.GRCh37.74.gtf.gz
GTF
Ictidomys_tridecemlineatus.spetri2.74.gtf
Ensembl
Ictidomys tridecemlineatus
43179
spetri2
Gene Annotation for Ictidomys tridecemlineatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ictidomys_tridecemlineatus/Ictidomys_tridecemlineatus.spetri2.74.gtf.gz
GTF
Latimeria_chalumnae.LatCha1.74.gtf
Ensembl
Latimeria chalumnae
7897
LatCha1
Gene Annotation for Latimeria chalumnae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/latimeria_chalumnae/Latimeria_chalumnae.LatCha1.74.gtf.gz
GTF
Lepisosteus_oculatus.LepOcu1.74.gtf
Ensembl
Lepisosteus oculatus
7918
LepOcu1
Gene Annotation for Lepisosteus oculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.74.gtf.gz
GTF
Loxodonta_africana.loxAfr3.74.gtf
Ensembl
Loxodonta africana
9785
loxAfr3
Gene Annotation for Loxodonta africana
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/loxodonta_africana/Loxodonta_africana.loxAfr3.74.gtf.gz
GTF
Macaca_mulatta.MMUL_1.74.gtf
Ensembl
Macaca mulatta
9544
MMUL_1
Gene Annotation for Macaca mulatta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/macaca_mulatta/Macaca_mulatta.MMUL_1.74.gtf.gz
GTF
Macropus_eugenii.Meug_1.0.74.gtf
Ensembl
Macropus eugenii
9315
Meug_1.0
Gene Annotation for Macropus eugenii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/macropus_eugenii/Macropus_eugenii.Meug_1.0.74.gtf.gz
GTF
Meleagris_gallopavo.UMD2.74.gtf
Ensembl
Meleagris gallopavo
9103
UMD2
Gene Annotation for Meleagris gallopavo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/meleagris_gallopavo/Meleagris_gallopavo.UMD2.74.gtf.gz
GTF
Microcebus_murinus.micMur1.74.gtf
Ensembl
Microcebus murinus
30608
micMur1
Gene Annotation for Microcebus murinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/microcebus_murinus/Microcebus_murinus.micMur1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/microcebus_murinus/Microcebus_murinus.micMur1.74.gtf.gz
GTF
Monodelphis_domestica.BROADO5.74.gtf
Ensembl
Monodelphis domestica
13616
BROADO5
Gene Annotation for Monodelphis domestica
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/monodelphis_domestica/Monodelphis_domestica.BROADO5.74.gtf.gz
GTF
Mus_musculus.GRCm38.74.gtf
Ensembl
Mus musculus
10090
GRCm38
Gene Annotation for Mus musculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/mus_musculus/Mus_musculus.GRCm38.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/mus_musculus/Mus_musculus.GRCm38.74.gtf.gz
GTF
Mustela_putorius_furo.MusPutFur1.0.74.gtf
Ensembl
Mustela putorius furo
9669
MusPutFur1.0
Gene Annotation for Mustela putorius furo
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/mustela_putorius_furo/Mustela_putorius_furo.MusPutFur1.0.74.gtf.gz
GTF
Myotis_lucifugus.Myoluc2.0.74.gtf
Ensembl
Myotis lucifugus
59463
Myoluc2.0
Gene Annotation for Myotis lucifugus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/myotis_lucifugus/Myotis_lucifugus.Myoluc2.0.74.gtf.gz
GTF
Nomascus_leucogenys.Nleu1.0.74.gtf
Ensembl
Nomascus leucogenys
61853
Nleu1.0
Gene Annotation for Nomascus leucogenys
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/nomascus_leucogenys/Nomascus_leucogenys.Nleu1.0.74.gtf.gz
GTF
Ochotona_princeps.pika.74.gtf
Ensembl
Ochotona princeps
9978
pika
Gene Annotation for Ochotona princeps
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ochotona_princeps/Ochotona_princeps.pika.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ochotona_princeps/Ochotona_princeps.pika.74.gtf.gz
GTF
Oreochromis_niloticus.Orenil1.0.74.gtf
Ensembl
Oreochromis niloticus
8128
Orenil1.0
Gene Annotation for Oreochromis niloticus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/oreochromis_niloticus/Oreochromis_niloticus.Orenil1.0.74.gtf.gz
GTF
Ornithorhynchus_anatinus.OANA5.74.gtf
Ensembl
Ornithorhynchus anatinus
9258
OANA5
Gene Annotation for Ornithorhynchus anatinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ornithorhynchus_anatinus/Ornithorhynchus_anatinus.OANA5.74.gtf.gz
GTF
Oryctolagus_cuniculus.OryCun2.0.74.gtf
Ensembl
Oryctolagus cuniculus
9986
OryCun2.0
Gene Annotation for Oryctolagus cuniculus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.OryCun2.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/oryctolagus_cuniculus/Oryctolagus_cuniculus.OryCun2.0.74.gtf.gz
GTF
Oryzias_latipes.MEDAKA1.74.gtf
Ensembl
Oryzias latipes
8090
MEDAKA1
Gene Annotation for Oryzias latipes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/oryzias_latipes/Oryzias_latipes.MEDAKA1.74.gtf.gz
GTF
Otolemur_garnettii.OtoGar3.74.gtf
Ensembl
Otolemur garnettii
30611
OtoGar3
Gene Annotation for Otolemur garnettii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/otolemur_garnettii/Otolemur_garnettii.OtoGar3.74.gtf.gz
GTF
Ovis_aries.Oar_v3.1.74.gtf
Ensembl
Ovis aries
9940
Oar_v3.1
Gene Annotation for Ovis aries
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/ovis_aries/Ovis_aries.Oar_v3.1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/ovis_aries/Ovis_aries.Oar_v3.1.74.gtf.gz
GTF
Pan_troglodytes.CHIMP2.1.4.74.gtf
Ensembl
Pan troglodytes
9598
CHIMP2.1.4
Gene Annotation for Pan troglodytes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/pan_troglodytes/Pan_troglodytes.CHIMP2.1.4.74.gtf.gz
GTF
Pelodiscus_sinensis.PelSin_1.0.74.gtf
Ensembl
Pelodiscus sinensis
13735
PelSin_1.0
Gene Annotation for Pelodiscus sinensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/pelodiscus_sinensis/Pelodiscus_sinensis.PelSin_1.0.74.gtf.gz
GTF
Petromyzon_marinus.Pmarinus_7.0.74.gtf
Ensembl
Petromyzon marinus
7757
Pmarinus_7.0
Gene Annotation for Petromyzon marinus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/petromyzon_marinus/Petromyzon_marinus.Pmarinus_7.0.74.gtf.gz
GTF
Pongo_abelii.PPYG2.74.gtf
Ensembl
Pongo abelii
9601
PPYG2
Gene Annotation for Pongo abelii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/pongo_abelii/Pongo_abelii.PPYG2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/pongo_abelii/Pongo_abelii.PPYG2.74.gtf.gz
GTF
Procavia_capensis.proCap1.74.gtf
Ensembl
Procavia capensis
9813
proCap1
Gene Annotation for Procavia capensis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/procavia_capensis/Procavia_capensis.proCap1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/procavia_capensis/Procavia_capensis.proCap1.74.gtf.gz
GTF
Pteropus_vampyrus.pteVam1.74.gtf
Ensembl
Pteropus vampyrus
132908
pteVam1
Gene Annotation for Pteropus vampyrus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/pteropus_vampyrus/Pteropus_vampyrus.pteVam1.74.gtf.gz
GTF
Rattus_norvegicus.Rnor_5.0.74.gtf
Ensembl
Rattus norvegicus
10116
Rnor_5.0
Gene Annotation for Rattus norvegicus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_5.0.74.gtf.gz
GTF
Saccharomyces_cerevisiae.EF4.74.gtf
Ensembl
Saccharomyces cerevisiae
4932
EF4
Gene Annotation for Saccharomyces cerevisiae
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/saccharomyces_cerevisiae/Saccharomyces_cerevisiae.EF4.74.gtf.gz
GTF
Sarcophilus_harrisii.DEVIL7.0.74.gtf
Ensembl
Sarcophilus harrisii
9305
DEVIL7.0
Gene Annotation for Sarcophilus harrisii
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/sarcophilus_harrisii/Sarcophilus_harrisii.DEVIL7.0.74.gtf.gz
GTF
Sorex_araneus.COMMON_SHREW1.74.gtf
Ensembl
Sorex araneus
42254
COMMON_SHREW1
Gene Annotation for Sorex araneus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/sorex_araneus/Sorex_araneus.COMMON_SHREW1.74.gtf.gz
GTF
Sus_scrofa.Sscrofa10.2.74.gtf
Ensembl
Sus scrofa
9823
Sscrofa10.2
Gene Annotation for Sus scrofa
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/sus_scrofa/Sus_scrofa.Sscrofa10.2.74.gtf.gz
GTF
Taeniopygia_guttata.taeGut3.2.4.74.gtf
Ensembl
Taeniopygia guttata
59729
taeGut3.2.4
Gene Annotation for Taeniopygia guttata
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/taeniopygia_guttata/Taeniopygia_guttata.taeGut3.2.4.74.gtf.gz
GTF
Takifugu_rubripes.FUGU4.74.gtf
Ensembl
Takifugu rubripes
31033
FUGU4
Gene Annotation for Takifugu rubripes
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/takifugu_rubripes/Takifugu_rubripes.FUGU4.74.gtf.gz
GTF
Tarsius_syrichta.tarSyr1.74.gtf
Ensembl
Tarsius syrichta
1868482
tarSyr1
Gene Annotation for Tarsius syrichta
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/tarsius_syrichta/Tarsius_syrichta.tarSyr1.74.gtf.gz
GTF
Tetraodon_nigroviridis.TETRAODON8.74.gtf
Ensembl
Tetraodon nigroviridis
99883
TETRAODON8
Gene Annotation for Tetraodon nigroviridis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/tetraodon_nigroviridis/Tetraodon_nigroviridis.TETRAODON8.74.gtf.gz
GTF
Tupaia_belangeri.TREESHREW.74.gtf
Ensembl
Tupaia belangeri
37347
TREESHREW
Gene Annotation for Tupaia belangeri
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/tupaia_belangeri/Tupaia_belangeri.TREESHREW.74.gtf.gz
GTF
Tursiops_truncatus.turTru1.74.gtf
Ensembl
Tursiops truncatus
9739
turTru1
Gene Annotation for Tursiops truncatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/tursiops_truncatus/Tursiops_truncatus.turTru1.74.gtf.gz
GTF
Vicugna_pacos.vicPac1.74.gtf
Ensembl
Vicugna pacos
30538
vicPac1
Gene Annotation for Vicugna pacos
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/vicugna_pacos/Vicugna_pacos.vicPac1.74.gtf.gz
GTF
Xenopus_tropicalis.JGI_4.2.74.gtf
Ensembl
Xenopus tropicalis
8364
JGI_4.2
Gene Annotation for Xenopus tropicalis
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/xenopus_tropicalis/Xenopus_tropicalis.JGI_4.2.74.gtf.gz
GTF
Xiphophorus_maculatus.Xipmac4.4.2.74.gtf
Ensembl
Xiphophorus maculatus
8083
Xipmac4.4.2
Gene Annotation for Xiphophorus maculatus
1
Martin Morgan <mtmorgan@fhcrc.org>
2013-12-19
EnsemblGtfImportPreparer
c("GTF", "ensembl", "Gene", "Transcript", "Annotation")
GRanges
ensembl/release-74/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.74.gtf_0.0.1.RData
ftp://ftp.ensembl.org/pub/release-74/gtf/xiphophorus_maculatus/Xiphophorus_maculatus.Xipmac4.4.2.74.gtf.gz
GTF
interactions from gerstein-2012
RefNet
Homo sapiens
9606
RefNet Genome
interactions from gerstein-2012
1
Paul Shannon <pshannon@fhcrc.org>
2014-03-31
RefNetImportPreparer
c("interactions", "interactions from gerstein-2012")
data.frame
refnet/gerstein-2012.tsv_0.0.1.RData
http://s3.amazonaws.com/annotationhub/refnet/gerstein-2012.tsv
TSV
interactions from hypoxiaSignaling-2006
RefNet
Homo sapiens
9606
RefNet Genome
interactions from hypoxiaSignaling-2006
1
Paul Shannon <pshannon@fhcrc.org>
2014-03-31
RefNetImportPreparer
c("interactions", "interactions from hypoxiaSignaling-2006")
data.frame
refnet/hypoxiaSignaling-2006.tsv_0.0.1.RData
http://s3.amazonaws.com/annotationhub/refnet/hypoxiaSignaling-2006.tsv
TSV
hom.Aedes_aegypti.inp8.sqlite
Inparanoid8
Aedes aegypti
7159
inparanoid8 genomes
Inparanoid 8 annotations about Aedes aegypti
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Aedes_aegypti.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.aegypti
Inparanoid
hom.Aquifex_aeolicus.inp8.sqlite
Inparanoid8
Aquifex aeolicus VF5
224324
inparanoid8 genomes
Inparanoid 8 annotations about Aquifex aeolicus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Aquifex_aeolicus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.aeolicus
Inparanoid
hom.Aureococcus_anophagefferens.inp8.sqlite
Inparanoid8
Aureococcus anophagefferens
44056
inparanoid8 genomes
Inparanoid 8 annotations about Aureococcus anophagefferens
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Aureococcus_anophagefferens.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.anophagefferens
Inparanoid
hom.Agaricus_bisporus.inp8.sqlite
Inparanoid8
Agaricus bisporus var. burnettii JB137-S8
597362
inparanoid8 genomes
Inparanoid 8 annotations about Agaricus bisporus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Agaricus_bisporus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.bisporus
Inparanoid
hom.Ajellomyces_capsulata.inp8.sqlite
Inparanoid8
Ajellomyces capsulatus G186AR
447093
inparanoid8 genomes
Inparanoid 8 annotations about Ajellomyces capsulata
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Ajellomyces_capsulata.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.capsulata
Inparanoid
hom.Anolis_carolinensis.inp8.sqlite
Inparanoid8
Anolis carolinensis
28377
inparanoid8 genomes
Inparanoid 8 annotations about Anolis carolinensis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Anolis_carolinensis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.carolinensis
Inparanoid
hom.Atta_cephalotes.inp8.sqlite
Inparanoid8
Atta cephalotes
12957
inparanoid8 genomes
Inparanoid 8 annotations about Atta cephalotes
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Atta_cephalotes.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.cephalotes
Inparanoid
hom.Anopheles_darlingi.inp8.sqlite
Inparanoid8
Anopheles darlingi
43151
inparanoid8 genomes
Inparanoid 8 annotations about Anopheles darlingi
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Anopheles_darlingi.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.darlingi
Inparanoid
hom.Auricularia_delicata.inp8.sqlite
Inparanoid8
Auricularia delicata
717982
inparanoid8 genomes
Inparanoid 8 annotations about Auricularia delicata
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Auricularia_delicata.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.delicata
Inparanoid
hom.Acromyrmex_echinatior.inp8.sqlite
Inparanoid8
Acromyrmex echinatior
103372
inparanoid8 genomes
Inparanoid 8 annotations about Acromyrmex echinatior
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Acromyrmex_echinatior.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.echinatior
Inparanoid
hom.Anopheles_gambiae.inp8.sqlite
Inparanoid8
Anopheles gambiae
7165
inparanoid8 genomes
Inparanoid 8 annotations about Anopheles gambiae
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Anopheles_gambiae.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.gambiae
Inparanoid
hom.Ashbya_gossypii.inp8.sqlite
Inparanoid8
Ashbya gossypii ATCC 10895
284811
inparanoid8 genomes
Inparanoid 8 annotations about Ashbya gossypii
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Ashbya_gossypii.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.gossypii
Inparanoid
hom.Arthroderma_gypseum.inp8.sqlite
Inparanoid8
Arthroderma gypseum
535722
inparanoid8 genomes
Inparanoid 8 annotations about Arthroderma gypseum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Arthroderma_gypseum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.gypseum
Inparanoid
hom.Aspergillus_kawachii.inp8.sqlite
Inparanoid8
Aspergillus kawachii IFO 4308
1033177
inparanoid8 genomes
Inparanoid 8 annotations about Aspergillus kawachii
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Aspergillus_kawachii.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.kawachii
Inparanoid
hom.Brugia_malayi.inp8.sqlite
Inparanoid8
Brugia malayi
6279
inparanoid8 genomes
Inparanoid 8 annotations about Brugia malayi
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Brugia_malayi.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.malayi
Inparanoid
hom.Bombyx_mori.inp8.sqlite
Inparanoid8
Bombyx mori
7091
inparanoid8 genomes
Inparanoid 8 annotations about Bombyx mori
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Bombyx_mori.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.mori
Inparanoid
hom.Brassica_rapa.inp8.sqlite
Inparanoid8
Brassica rapa
51351
inparanoid8 genomes
Inparanoid 8 annotations about Brassica rapa
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Brassica_rapa.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.rapa
Inparanoid
hom.Bacillus_subtilis.inp8.sqlite
Inparanoid8
Bacillus subtilis
224308
inparanoid8 genomes
Inparanoid 8 annotations about Bacillus subtilis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Bacillus_subtilis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.subtilis
Inparanoid
hom.Bos_taurus.inp8.sqlite
Inparanoid8
Bos taurus
9913
inparanoid8 genomes
Inparanoid 8 annotations about Bos taurus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Bos_taurus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.taurus
Inparanoid
hom.Candida_albicans.inp8.sqlite
Inparanoid8
Candida albicans
237561
inparanoid8 genomes
Inparanoid 8 annotations about Candida albicans
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Candida_albicans.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.albicans
Inparanoid
hom.Coprinopsis_cinerea.inp8.sqlite
Inparanoid8
Coprinopsis cinerea okayama7#130
240176
inparanoid8 genomes
Inparanoid 8 annotations about Coprinopsis cinerea
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Coprinopsis_cinerea.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.cinerea
Inparanoid
hom.Caenorhabditis_elegans.inp8.sqlite
Inparanoid8
Caenorhabditis elegans
6239
inparanoid8 genomes
Inparanoid 8 annotations about Caenorhabditis elegans
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Caenorhabditis_elegans.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.elegans
Inparanoid
hom.Canis_familiaris.inp8.sqlite
Inparanoid8
Canis familiaris
9615
inparanoid8 genomes
Inparanoid 8 annotations about Canis familiaris
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Canis_familiaris.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.familiaris
Inparanoid
hom.Camponotus_floridanus.inp8.sqlite
Inparanoid8
Camponotus floridanus
104421
inparanoid8 genomes
Inparanoid 8 annotations about Camponotus floridanus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Camponotus_floridanus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.floridanus
Inparanoid
hom.Crassostrea_gigas.inp8.sqlite
Inparanoid8
Crassostrea gigas
29159
inparanoid8 genomes
Inparanoid 8 annotations about Crassostrea gigas
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Crassostrea_gigas.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.gigas
Inparanoid
hom.Candida_glabrata.inp8.sqlite
Inparanoid8
[Candida] glabrata CBS 138
284593
inparanoid8 genomes
Inparanoid 8 annotations about Candida glabrata
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Candida_glabrata.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.glabrata
Inparanoid
hom.Chaetomium_globosum.inp8.sqlite
Inparanoid8
Chaetomium globosum CBS 148.51
306901
inparanoid8 genomes
Inparanoid 8 annotations about Chaetomium globosum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Chaetomium_globosum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.globosum
Inparanoid
hom.Cricetulus_griseus.inp8.sqlite
Inparanoid8
Cricetulus griseus
10029
inparanoid8 genomes
Inparanoid 8 annotations about Cricetulus griseus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Cricetulus_griseus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.griseus
Inparanoid
hom.Cryptosporidium_hominis.inp8.sqlite
Inparanoid8
Cryptosporidium hominis
237895
inparanoid8 genomes
Inparanoid 8 annotations about Cryptosporidium hominis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Cryptosporidium_hominis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.hominis
Inparanoid
hom.Coccidioides_immitis.inp8.sqlite
Inparanoid8
Coccidioides immitis
246410
inparanoid8 genomes
Inparanoid 8 annotations about Coccidioides immitis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Coccidioides_immitis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.immitis
Inparanoid
hom.Ciona_intestinalis.inp8.sqlite
Inparanoid8
Ciona intestinalis
7719
inparanoid8 genomes
Inparanoid 8 annotations about Ciona intestinalis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Ciona_intestinalis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.intestinalis
Inparanoid
hom.Callithrix_jacchus.inp8.sqlite
Inparanoid8
Callithrix jacchus
9483
inparanoid8 genomes
Inparanoid 8 annotations about Callithrix jacchus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Callithrix_jacchus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.jacchus
Inparanoid
hom.Caenorhabditis_japonica.inp8.sqlite
Inparanoid8
Caenorhabditis japonica
281687
inparanoid8 genomes
Inparanoid 8 annotations about Caenorhabditis japonica
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Caenorhabditis_japonica.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.japonica
Inparanoid
hom.Drosophila_grimshawi.inp8.sqlite
Inparanoid8
Drosophila grimshawi
7222
inparanoid8 genomes
Inparanoid 8 annotations about Drosophila grimshawi
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Drosophila_grimshawi.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.grimshawi
Inparanoid
hom.Debaryomyces_hansenii.inp8.sqlite
Inparanoid8
Debaryomyces hansenii
284592
inparanoid8 genomes
Inparanoid 8 annotations about Debaryomyces hansenii
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Debaryomyces_hansenii.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.hansenii
Inparanoid
hom.Drosophila_melanogaster.inp8.sqlite
Inparanoid8
Drosophila melanogaster
7227
inparanoid8 genomes
Inparanoid 8 annotations about Drosophila melanogaster
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Drosophila_melanogaster.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.melanogaster
Inparanoid
hom.Drosophila_mojavensis.inp8.sqlite
Inparanoid8
Drosophila mojavensis
7230
inparanoid8 genomes
Inparanoid 8 annotations about Drosophila mojavensis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Drosophila_mojavensis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.mojavensis
Inparanoid
hom.Danaus_plexippus.inp8.sqlite
Inparanoid8
Danaus plexippus
13037
inparanoid8 genomes
Inparanoid 8 annotations about Danaus plexippus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Danaus_plexippus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.plexippus
Inparanoid
hom.Daphnia_pulex.inp8.sqlite
Inparanoid8
Daphnia pulex
6669
inparanoid8 genomes
Inparanoid 8 annotations about Daphnia pulex
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Daphnia_pulex.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.pulex
Inparanoid
hom.Dictyostelium_purpureum.inp8.sqlite
Inparanoid8
Dictyostelium purpureum
5786
inparanoid8 genomes
Inparanoid 8 annotations about Dictyostelium purpureum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Dictyostelium_purpureum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/D.purpureum
Inparanoid
hom.Laccaria_bicolor.inp8.sqlite
Inparanoid8
Laccaria bicolor S238N-H82
486041
inparanoid8 genomes
Inparanoid 8 annotations about Laccaria bicolor
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Laccaria_bicolor.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.bicolor
Inparanoid
hom.Latimeria_chalumnae.inp8.sqlite
Inparanoid8
Latimeria chalumnae
7897
inparanoid8 genomes
Inparanoid 8 annotations about Latimeria chalumnae
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Latimeria_chalumnae.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.chalumnae
Inparanoid
hom.Leishmania_infantum.inp8.sqlite
Inparanoid8
Leishmania infantum
5671
inparanoid8 genomes
Inparanoid 8 annotations about Leishmania infantum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Leishmania_infantum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.infantum
Inparanoid
hom.Leptospira_interrogans.inp8.sqlite
Inparanoid8
Leptospira interrogans
189518
inparanoid8 genomes
Inparanoid 8 annotations about Leptospira interrogans
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Leptospira_interrogans.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.interrogans
Inparanoid
hom.Loa_loa.inp8.sqlite
Inparanoid8
Loa loa
7209
inparanoid8 genomes
Inparanoid 8 annotations about Loa loa
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Loa_loa.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.loa
Inparanoid
hom.Leptosphaeria_maculans.inp8.sqlite
Inparanoid8
Leptosphaeria maculans
985895
inparanoid8 genomes
Inparanoid 8 annotations about Leptosphaeria maculans
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Leptosphaeria_maculans.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.maculans
Inparanoid
hom.Leishmania_major.inp8.sqlite
Inparanoid8
Leishmania major
5664
inparanoid8 genomes
Inparanoid 8 annotations about Leishmania major
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Leishmania_major.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.major
Inparanoid
hom.Lachancea_thermotolerans.inp8.sqlite
Inparanoid8
Lachancea thermotolerans
559295
inparanoid8 genomes
Inparanoid 8 annotations about Lachancea thermotolerans
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Lachancea_thermotolerans.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/L.thermotolerans
Inparanoid
hom.Methanosarcina_acetivorans.inp8.sqlite
Inparanoid8
Methanosarcina acetivorans
188937
inparanoid8 genomes
Inparanoid 8 annotations about Methanosarcina acetivorans
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Methanosarcina_acetivorans.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/M.acetivorans
Inparanoid
hom.Metarhizium_acridum.inp8.sqlite
Inparanoid8
Metarhizium acridum
655827
inparanoid8 genomes
Inparanoid 8 annotations about Metarhizium acridum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Metarhizium_acridum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/M.acridum
Inparanoid
hom.Monosiga_brevicollis.inp8.sqlite
Inparanoid8
Monosiga brevicollis
81824
inparanoid8 genomes
Inparanoid 8 annotations about Monosiga brevicollis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Monosiga_brevicollis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/M.brevicollis
Inparanoid
hom.Marssonina_brunnea.inp8.sqlite
Inparanoid8
Marssonina brunnea
1072389
inparanoid8 genomes
Inparanoid 8 annotations about Marssonina brunnea
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Marssonina_brunnea.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/M.brunnea
Inparanoid
hom.Monodelphis_domestica.inp8.sqlite
Inparanoid8
Monodelphis domestica
13616
inparanoid8 genomes
Inparanoid 8 annotations about Monodelphis domestica
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Monodelphis_domestica.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/M.domestica
Inparanoid
hom.Meleagris_gallopavo.inp8.sqlite
Inparanoid8
Meleagris gallopavo
9103
inparanoid8 genomes
Inparanoid 8 annotations about Meleagris gallopavo
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Meleagris_gallopavo.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/M.gallopavo
Inparanoid
hom.Puccinia_graminis.inp8.sqlite
Inparanoid8
Puccinia graminis
418459
inparanoid8 genomes
Inparanoid 8 annotations about Puccinia graminis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Puccinia_graminis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.graminis
Inparanoid
hom.Pediculus_humanus.inp8.sqlite
Inparanoid8
Pediculus humanus
121224
inparanoid8 genomes
Inparanoid 8 annotations about Pediculus humanus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Pediculus_humanus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.humanus
Inparanoid
hom.Piriformospora_indica.inp8.sqlite
Inparanoid8
Piriformospora indica
1109443
inparanoid8 genomes
Inparanoid 8 annotations about Piriformospora indica
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Piriformospora_indica.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.indica
Inparanoid
hom.Plasmodium_knowlesi.inp8.sqlite
Inparanoid8
Plasmodium knowlesi
5851
inparanoid8 genomes
Inparanoid 8 annotations about Plasmodium knowlesi
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Plasmodium_knowlesi.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.knowlesi
Inparanoid
hom.Perkinsus_marinus.inp8.sqlite
Inparanoid8
Perkinsus marinus
423536
inparanoid8 genomes
Inparanoid 8 annotations about Perkinsus marinus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Perkinsus_marinus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.marinus
Inparanoid
hom.Phaeosphaeria_nodorum.inp8.sqlite
Inparanoid8
Parastagonospora nodorum SN15
321614
inparanoid8 genomes
Inparanoid 8 annotations about Phaeosphaeria nodorum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Phaeosphaeria_nodorum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.nodorum
Inparanoid
hom.Pristionchus_pacificus.inp8.sqlite
Inparanoid8
Pristionchus pacificus
54126
inparanoid8 genomes
Inparanoid 8 annotations about Pristionchus pacificus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Pristionchus_pacificus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.pacificus
Inparanoid
hom.Polysphondylium_pallidum.inp8.sqlite
Inparanoid8
Polysphondylium pallidum
13642
inparanoid8 genomes
Inparanoid 8 annotations about Polysphondylium pallidum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Polysphondylium_pallidum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.pallidum
Inparanoid
hom.Physcomitrella_patens.inp8.sqlite
Inparanoid8
Physcomitrella patens
145481
inparanoid8 genomes
Inparanoid 8 annotations about Physcomitrella patens
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Physcomitrella_patens.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.patens
Inparanoid
hom.Postia_placenta.inp8.sqlite
Inparanoid8
Postia placenta
561896
inparanoid8 genomes
Inparanoid 8 annotations about Postia placenta
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Postia_placenta.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.placenta
Inparanoid
hom.Phytophthora_ramorum.inp8.sqlite
Inparanoid8
Phytophthora ramorum
164328
inparanoid8 genomes
Inparanoid 8 annotations about Phytophthora ramorum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Phytophthora_ramorum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.ramorum
Inparanoid
hom.Phytophthora_sojae.inp8.sqlite
Inparanoid8
Phytophthora sojae
1094619
inparanoid8 genomes
Inparanoid 8 annotations about Phytophthora sojae
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Phytophthora_sojae.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.sojae
Inparanoid
hom.Pichia_sorbitophila.inp8.sqlite
Inparanoid8
Pichia sorbitophila
559304
inparanoid8 genomes
Inparanoid 8 annotations about Pichia sorbitophila
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Pichia_sorbitophila.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.sorbitophila
Inparanoid
hom.Paramecium_tetraurelia.inp8.sqlite
Inparanoid8
Paramecium tetraurelia
5888
inparanoid8 genomes
Inparanoid 8 annotations about Paramecium tetraurelia
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Paramecium_tetraurelia.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.tetraurelia
Inparanoid
hom.Populus_trichocarpa.inp8.sqlite
Inparanoid8
Populus trichocarpa
3694
inparanoid8 genomes
Inparanoid 8 annotations about Populus trichocarpa
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Populus_trichocarpa.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/P.trichocarpa
Inparanoid
hom.Toxoplasma_gondii.inp8.sqlite
Inparanoid8
Toxoplasma gondii
5811
inparanoid8 genomes
Inparanoid 8 annotations about Toxoplasma gondii
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Toxoplasma_gondii.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.gondii
Inparanoid
hom.Taeniopygia_guttata.inp8.sqlite
Inparanoid8
Taeniopygia guttata
59729
inparanoid8 genomes
Inparanoid 8 annotations about Taeniopygia guttata
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Taeniopygia_guttata.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.guttata
Inparanoid
hom.Thermotoga_maritima.inp8.sqlite
Inparanoid8
Thermotoga maritima
243274
inparanoid8 genomes
Inparanoid 8 annotations about Thermotoga maritima
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Thermotoga_maritima.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.maritima
Inparanoid
hom.Tuber_melanosporum.inp8.sqlite
Inparanoid8
Tuber melanosporum
656061
inparanoid8 genomes
Inparanoid 8 annotations about Tuber melanosporum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Tuber_melanosporum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.melanosporum
Inparanoid
hom.Theileria_parva.inp8.sqlite
Inparanoid8
Theileria parva
5875
inparanoid8 genomes
Inparanoid 8 annotations about Theileria parva
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Theileria_parva.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.parva
Inparanoid
hom.Thalassiosira_pseudonana.inp8.sqlite
Inparanoid8
Thalassiosira pseudonana
35128
inparanoid8 genomes
Inparanoid 8 annotations about Thalassiosira pseudonana
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Thalassiosira_pseudonana.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.pseudonana
Inparanoid
hom.Takifugu_rubripes.inp8.sqlite
Inparanoid8
Takifugu rubripes
31033
inparanoid8 genomes
Inparanoid 8 annotations about Takifugu rubripes
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Takifugu_rubripes.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.rubripes
Inparanoid
hom.Trichophyton_rubrum.inp8.sqlite
Inparanoid8
Trichophyton rubrum
559305
inparanoid8 genomes
Inparanoid 8 annotations about Trichophyton rubrum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Trichophyton_rubrum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.rubrum
Inparanoid
hom.Trichinella_spiralis.inp8.sqlite
Inparanoid8
Trichinella spiralis
6334
inparanoid8 genomes
Inparanoid 8 annotations about Trichinella spiralis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Trichinella_spiralis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.spiralis
Inparanoid
hom.Talaromyces_stipitatus.inp8.sqlite
Inparanoid8
Talaromyces stipitatus
441959
inparanoid8 genomes
Inparanoid 8 annotations about Talaromyces stipitatus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Talaromyces_stipitatus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.stipitatus
Inparanoid
hom.Tetrahymena_thermophila.inp8.sqlite
Inparanoid8
Tetrahymena thermophila
312017
inparanoid8 genomes
Inparanoid 8 annotations about Tetrahymena thermophila
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Tetrahymena_thermophila.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.thermophila
Inparanoid
hom.Trichomonas_vaginalis.inp8.sqlite
Inparanoid8
Trichomonas vaginalis
5722
inparanoid8 genomes
Inparanoid 8 annotations about Trichomonas vaginalis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Trichomonas_vaginalis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.vaginalis
Inparanoid
hom.Thermodesulfovibrio_yellowstonii.inp8.sqlite
Inparanoid8
Thermodesulfovibrio yellowstonii
289376
inparanoid8 genomes
Inparanoid 8 annotations about Thermodesulfovibrio yellowstonii
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Thermodesulfovibrio_yellowstonii.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/T.yellowstonii
Inparanoid
hom.Ustilago_maydis.inp8.sqlite
Inparanoid8
Ustilago maydis
237631
inparanoid8 genomes
Inparanoid 8 annotations about Ustilago maydis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Ustilago_maydis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/U.maydis
Inparanoid
hom.Uncinocarpus_reesii.inp8.sqlite
Inparanoid8
Uncinocarpus reesii
336963
inparanoid8 genomes
Inparanoid 8 annotations about Uncinocarpus reesii
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Uncinocarpus_reesii.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/U.reesii
Inparanoid
hom.Volvox_carteri.inp8.sqlite
Inparanoid8
Volvox carteri
3067
inparanoid8 genomes
Inparanoid 8 annotations about Volvox carteri
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Volvox_carteri.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/V.carteri
Inparanoid
hom.Ailuropoda_melanoleuca.inp8.sqlite
Inparanoid8
Ailuropoda melanoleuca
9646
inparanoid8 genomes
Inparanoid 8 annotations about Ailuropoda melanoleuca
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Ailuropoda_melanoleuca.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.melanoleuca
Inparanoid
hom.Apis_mellifera.inp8.sqlite
Inparanoid8
Apis mellifera
7460
inparanoid8 genomes
Inparanoid 8 annotations about Apis mellifera
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Apis_mellifera.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.mellifera
Inparanoid
hom.Arthrobotrys_oligospora.inp8.sqlite
Inparanoid8
Arthrobotrys oligospora
756982
inparanoid8 genomes
Inparanoid 8 annotations about Arthrobotrys oligospora
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Arthrobotrys_oligospora.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.oligospora
Inparanoid
hom.Acyrthosiphon_pisum.inp8.sqlite
Inparanoid8
Acyrthosiphon pisum
7029
inparanoid8 genomes
Inparanoid 8 annotations about Acyrthosiphon pisum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Acyrthosiphon_pisum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.pisum
Inparanoid
hom.Amphimedon_queenslandica.inp8.sqlite
Inparanoid8
Amphimedon queenslandica
400682
inparanoid8 genomes
Inparanoid 8 annotations about Amphimedon queenslandica
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Amphimedon_queenslandica.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.queenslandica
Inparanoid
hom.Arabidopsis_thaliana.inp8.sqlite
Inparanoid8
Arabidopsis thaliana
3702
inparanoid8 genomes
Inparanoid 8 annotations about Arabidopsis thaliana
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Arabidopsis_thaliana.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/A.thaliana
Inparanoid
hom.Beauveria_bassiana.inp8.sqlite
Inparanoid8
Beauveria bassiana
655819
inparanoid8 genomes
Inparanoid 8 annotations about Beauveria bassiana
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Beauveria_bassiana.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.bassiana
Inparanoid
hom.Babesia_bovis.inp8.sqlite
Inparanoid8
Babesia bovis
5865
inparanoid8 genomes
Inparanoid 8 annotations about Babesia bovis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Babesia_bovis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.bovis
Inparanoid
hom.Batrachochytrium_dendrobatidis.inp8.sqlite
Inparanoid8
Batrachochytrium dendrobatidis
684364
inparanoid8 genomes
Inparanoid 8 annotations about Batrachochytrium dendrobatidis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Batrachochytrium_dendrobatidis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.dendrobatidis
Inparanoid
hom.Brachypodium_distachyon.inp8.sqlite
Inparanoid8
Brachypodium distachyon
15368
inparanoid8 genomes
Inparanoid 8 annotations about Brachypodium distachyon
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Brachypodium_distachyon.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.distachyon
Inparanoid
hom.Branchiostoma_floridae.inp8.sqlite
Inparanoid8
Branchiostoma floridae
7739
inparanoid8 genomes
Inparanoid 8 annotations about Branchiostoma floridae
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Branchiostoma_floridae.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.floridae
Inparanoid
hom.Botryotinia_fuckeliana.inp8.sqlite
Inparanoid8
Botryotinia fuckeliana
999810
inparanoid8 genomes
Inparanoid 8 annotations about Botryotinia fuckeliana
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Botryotinia_fuckeliana.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.fuckeliana
Inparanoid
hom.Blastocystis_hominis.inp8.sqlite
Inparanoid8
Blastocystis hominis
12968
inparanoid8 genomes
Inparanoid 8 annotations about Blastocystis hominis
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Blastocystis_hominis.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.hominis
Inparanoid
hom.Bradyrhizobium_japonicum.inp8.sqlite
Inparanoid8
Bradyrhizobium japonicum
224911
inparanoid8 genomes
Inparanoid 8 annotations about Bradyrhizobium japonicum
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Bradyrhizobium_japonicum.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.japonicum
Inparanoid
hom.Bacteroides_thetaiotaomicron.inp8.sqlite
Inparanoid8
Bacteroides thetaiotaomicron
226186
inparanoid8 genomes
Inparanoid 8 annotations about Bacteroides thetaiotaomicron
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Bacteroides_thetaiotaomicron.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/B.thetaiotaomicron
Inparanoid
hom.Chloroflexus_aurantiacus.inp8.sqlite
Inparanoid8
Chloroflexus aurantiacus
324602
inparanoid8 genomes
Inparanoid 8 annotations about Chloroflexus aurantiacus
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Chloroflexus_aurantiacus.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.aurantiacus
Inparanoid
hom.Caenorhabditis_brenneri.inp8.sqlite
Inparanoid8
Caenorhabditis brenneri
135651
inparanoid8 genomes
Inparanoid 8 annotations about Caenorhabditis brenneri
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Caenorhabditis_brenneri.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.brenneri
Inparanoid
hom.Caenorhabditis_briggsae.inp8.sqlite
Inparanoid8
Caenorhabditis briggsae
6238
inparanoid8 genomes
Inparanoid 8 annotations about Caenorhabditis briggsae
1
Marc Carlson <mcarlson@fhcrc.org>
2014-03-31
Inparanoid8ImportPreparer
c("Inparanoid", "Gene", "Homology", "Annotation")
Inparanoid8Db
inparanoid8/Orthologs/hom.Caenorhabditis_briggsae.inp8.sqlite
http://inparanoid.sbc.su.se/download/current/Orthologs/C.briggsae
Inparanoid