Cluster_ID Organism miRNA_locus_ID Chromosome Strand Start End Mtr-CL1 Medicago_truncatula Mtr-MIR156a,Mtr-MIR156b Mtr-chr1 - 4043005 4043114 Mtr-CL10 Medicago_truncatula Mtr-MIR2118,Mtr-MIR482a Mtr-chr1 - 49429817 49429932 Mtr-CL11 Medicago_truncatula Mtr-MIR166b,Mtr-MIR166m Mtr-chr2 - 839294 839474 Mtr-CL12 Medicago_truncatula Mtr-MIR160c,Mtr-MIR160j Mtr-chr2 - 10123106 10123212 Mtr-CL13 Medicago_truncatula Mtr-MIR169b,Mtr-MIR169c,Mtr-MIR169d,Mtr-MIR169e,Mtr-MIR169j,Mtr-MIR169r,Mtr-MIR169t Mtr-chr2 + 16049929 16072672 Mtr-CL14 Medicago_truncatula Mtr-MIR2592br,Mtr-MIR2592cz Mtr-chr2 + 18393676 18393976 Mtr-CL15 Medicago_truncatula Mtr-MIR171b,Mtr-MIR171m Mtr-chr2 + 37124695 37124804 Mtr-CL16 Medicago_truncatula Mtr-MIR172b,Mtr-MIR172f Mtr-chr2 - 40696474 40696596 Mtr-CL17 Medicago_truncatula Mtr-MIR2086a,Mtr-MIR2086b,Mtr-MIR2651a,Mtr-MIR2651b Mtr-chr2 - 42829716 42830678 Mtr-CL18 Medicago_truncatula Mtr-MIR2592bj,Mtr-MIR2592ct Mtr-chr2 + 43491734 43491932 Mtr-CL19 Medicago_truncatula Mtr-MIR2592cj,Mtr-MIR5554g Mtr-chr3 - 19452620 19453155 Mtr-CL2 Medicago_truncatula Mtr-MIR5743a,Mtr-MIR5743b Mtr-chr1 - 8319690 8329613 Mtr-CL20 Medicago_truncatula Mtr-MIR172d,Mtr-MIR172i Mtr-chr3 - 30584144 30584264 Mtr-CL21 Medicago_truncatula Mtr-MIR2596a,Mtr-MIR2596b,Mtr-MIR5210 Mtr-chr3 + 31715475 31720121 Mtr-CL22 Medicago_truncatula Mtr-MIR1509b,Mtr-MIRN1988 Mtr-chr3 + 32125364 32125481 Mtr-CL23 Medicago_truncatula Mtr-MIR171g,Mtr-MIR171h,Mtr-MIR171q Mtr-chr3 - 41952569 41952865 Mtr-CL24 Medicago_truncatula Mtr-MIR2592bk,Mtr-MIR2592cu Mtr-chr3 + 43570204 43570402 Mtr-CL25 Medicago_truncatula Mtr-MIR165,Mtr-MIR166c,Mtr-MIR166n Mtr-chr3 - 44456226 44456501 Mtr-CL26 Medicago_truncatula Mtr-MIR169g,Mtr-MIRN1951 Mtr-chr3 - 45202795 45206450 Mtr-CL27 Medicago_truncatula Mtr-MIR156c,Mtr-MIR156e Mtr-chr3 + 48230211 48230323 Mtr-CL28 Medicago_truncatula Mtr-MIR156d,Mtr-MIR156f Mtr-chr3 - 48955716 48955820 Mtr-CL29 Medicago_truncatula Mtr-MIR2592aa,Mtr-MIR2592bi Mtr-chr3 + 51015571 51015769 Mtr-CL3 Medicago_truncatula Mtr-MIR160a,Mtr-MIR160e Mtr-chr1 + 28422462 28422580 Mtr-CL30 Medicago_truncatula Mtr-MIRN1942a,Mtr-MIRN1949 Mtr-chr4 + 4925697 4931240 Mtr-CL31 Medicago_truncatula Mtr-MIR2111p,Mtr-MIR2111q,Mtr-MIR2111w Mtr-chr4 - 6068783 6073353 Mtr-CL32 Medicago_truncatula Mtr-MIR2644a,Mtr-MIR2644b Mtr-chr4 + 20913356 20913572 Mtr-CL33 Medicago_truncatula Mtr-MIR172c,Mtr-MIR172g Mtr-chr4 + 21427195 21427342 Mtr-CL34 Medicago_truncatula Mtr-MIR2592bl,Mtr-MIR2592bq,Mtr-MIRN1897f Mtr-chr4 + 24607199 24607541 Mtr-CL35 Medicago_truncatula Mtr-MIR2612,Mtr-MIRN1948 Mtr-chr4 + 28717356 28717475 Mtr-CL36 Medicago_truncatula Mtr-MIR2634a,Mtr-MIR2634b Mtr-chr4 - 34335226 34335330 Mtr-CL37 Medicago_truncatula Mtr-MIR162a,Mtr-MIR162b Mtr-chr4 - 46038008 46038129 Mtr-CL38 Medicago_truncatula Mtr-MIR171e,Mtr-MIR171n Mtr-chr4 + 47495940 47496048 Mtr-CL39 Medicago_truncatula Mtr-MIR2592ap,Mtr-MIR2592dd Mtr-chr4 - 51427910 51428077 Mtr-CL4 Medicago_truncatula Mtr-MIR166a,Mtr-MIR166h Mtr-chr1 - 33330088 33330205 Mtr-CL40 Medicago_truncatula Mtr-MIR169h,Mtr-MIR169o,Mtr-MIR169p Mtr-chr4 - 52961698 52967774 Mtr-CL41 Medicago_truncatula Mtr-MIR156h,Mtr-MIR156i Mtr-chr4 - 54672410 54672517 Mtr-CL42 Medicago_truncatula Mtr-MIR1507a,Mtr-MIR1507b Mtr-chr4 + 54810548 54810671 Mtr-CL43 Medicago_truncatula Mtr-MIR171f,Mtr-MIR171j Mtr-chr4 - 55239583 55239689 Mtr-CL44 Medicago_truncatula Mtr-MIR2592bm,Mtr-MIR2592cn Mtr-chr5 + 3169813 3170012 Mtr-CL45 Medicago_truncatula Mtr-MIR2592bn,Mtr-MIR2592cp Mtr-chr5 + 8538230 8538430 Mtr-CL46 Medicago_truncatula Mtr-MIR171c,Mtr-MIR171k Mtr-chr5 + 9192852 9192968 Mtr-CL47 Medicago_truncatula Mtr-MIR168c,Mtr-MIR168e Mtr-chr5 + 10535753 10535878 Mtr-CL48 Medicago_truncatula Mtr-MIR2592az,Mtr-MIR2592cm Mtr-chr5 + 11346985 11347153 Mtr-CL49 Medicago_truncatula Mtr-MIR5229a,Mtr-MIR5229b,Mtr-MIR5229c,Mtr-MIR5229d,Mtr-MIR5229e,Mtr-MIR5229f,Mtr-MIR5229g Mtr-chr5 + 11496112 11540573 Mtr-CL5 Medicago_truncatula Mtr-MIR169l,Mtr-MIR169q Mtr-chr1 + 34472306 34472443 Mtr-CL50 Medicago_truncatula Mtr-MIR395j,Mtr-MIR395k Mtr-chr5 - 16994615 17002776 Mtr-CL51 Medicago_truncatula Mtr-MIR395d,Mtr-MIR395e,Mtr-MIR395f,Mtr-MIR395g,Mtr-MIR395h,Mtr-MIR395i Mtr-chr5 - 17017850 17048507 Mtr-CL52 Medicago_truncatula Mtr-MIR395b,Mtr-MIRN1963 Mtr-chr5 - 17079580 17082489 Mtr-CL53 Medicago_truncatula Mtr-MIR1510a,Mtr-MIR1510b,Mtr-MIR2089a,Mtr-MIR2089b,Mtr-MIR2592j,Mtr-MIRN1985 Mtr-chr5 + 19027864 19045049 Mtr-CL54 Medicago_truncatula Mtr-MIR2119a,Mtr-MIR2119b,Mtr-MIR398a Mtr-chr5 - 19180837 19181257 Mtr-CL55 Medicago_truncatula Mtr-MIR2633a,Mtr-MIR2633b Mtr-chr5 + 26539054 26539174 Mtr-CL56 Medicago_truncatula Mtr-MIR172a,Mtr-MIR172h Mtr-chr5 - 34277337 34277463 Mtr-CL57 Medicago_truncatula Mtr-MIR2648a,Mtr-MIR2648b Mtr-chr5 - 38824679 38824818 Mtr-CL58 Medicago_truncatula Mtr-MIR2643a,Mtr-MIR2643b Mtr-chr5 - 42295733 42295832 Mtr-CL59 Medicago_truncatula Mtr-MIR168b,Mtr-MIR168d Mtr-chr5 + 43013988 43014095 Mtr-CL6 Medicago_truncatula Mtr-MIR164a,Mtr-MIR164e Mtr-chr1 + 39521533 39521646 Mtr-CL60 Medicago_truncatula Mtr-MIR5560,Mtr-MIRN1894 Mtr-chr6 + 7007046 7010240 Mtr-CL61 Medicago_truncatula Mtr-MIR157a,Mtr-MIR157f Mtr-chr6 - 7611779 7611887 Mtr-CL62 Medicago_truncatula Mtr-MIR399h,Mtr-MIR399i Mtr-chr6 - 22960585 22966253 Mtr-CL63 Medicago_truncatula Mtr-MIR399e,Mtr-MIR399f Mtr-chr6 + 23822140 23827807 Mtr-CL64 Medicago_truncatula Mtr-MIR169a,Mtr-MIR169s Mtr-chr6 + 24591468 24591591 Mtr-CL65 Medicago_truncatula Mtr-MIR159a,Mtr-MIR159d Mtr-chr6 + 30237975 30238171 Mtr-CL66 Medicago_truncatula Mtr-MIR157h,Mtr-MIR157i Mtr-chr6 - 30617113 30617247 Mtr-CL67 Medicago_truncatula Mtr-MIR2592cx,Mtr-MIR5554j Mtr-chr6 - 35020710 35021162 Mtr-CL68 Medicago_truncatula Mtr-MIR171a,Mtr-MIR171l Mtr-chr7 - 9888229 9888341 Mtr-CL69 Medicago_truncatula Mtr-MIR2595a,Mtr-MIR2595b Mtr-chr7 + 13747545 13747683 Mtr-CL7 Medicago_truncatula Mtr-MIR160b,Mtr-MIR160g Mtr-chr1 - 42904591 42904696 Mtr-CL70 Medicago_truncatula Mtr-MIRN1960a,Mtr-MIRN1960b Mtr-chr7 + 15423569 15425811 Mtr-CL71 Medicago_truncatula Mtr-MIR2111o,Mtr-MIR2111s Mtr-chr7 - 23550095 23550199 Mtr-CL72 Medicago_truncatula Mtr-MIR2111a,Mtr-MIR2111aa,Mtr-MIR2111ab,Mtr-MIR2111ac,Mtr-MIR2111ad,Mtr-MIR2111b,Mtr-MIR2111c,Mtr-MIR2111d,Mtr-MIR2111e,Mtr-MIR2111f,Mtr-MIR2111g,Mtr-MIR2111h,Mtr-MIR2111i,Mtr-MIR2111j,Mtr-MIR2111k,Mtr-MIR2111l,Mtr-MIR2111m,Mtr-MIR2111n,Mtr-MIR2111r,Mtr-MIR2111t,Mtr-MIR2111u,Mtr-MIR2111v,Mtr-MIR2111x,Mtr-MIR2111y,Mtr-MIR2111z Mtr-chr7 - 23566017 23625592 Mtr-CL73 Medicago_truncatula Mtr-MIR5770a,Mtr-MIR5770b Mtr-chr7 - 23909100 23909422 Mtr-CL74 Medicago_truncatula Mtr-MIR164b,Mtr-MIR164f Mtr-chr7 + 26766571 26766729 Mtr-CL75 Medicago_truncatula Mtr-MIR2592be,Mtr-MIR2592bz Mtr-chr7 + 30360793 30360964 Mtr-CL76 Medicago_truncatula Mtr-MIR477b,Mtr-MIR477c Mtr-chr7 - 31441410 31447696 Mtr-CL77 Medicago_truncatula Mtr-MIR477a,Mtr-MIR5206a Mtr-chr7 - 31452323 31454522 Mtr-CL78 Medicago_truncatula Mtr-MIR157b,Mtr-MIR157g Mtr-chr7 + 31748905 31749013 Mtr-CL79 Medicago_truncatula Mtr-MIR166f,Mtr-MIR166o Mtr-chr7 - 33363750 33363941 Mtr-CL8 Medicago_truncatula Mtr-MIR2592ab,Mtr-MIR2592cs Mtr-chr1 - 44337037 44337247 Mtr-CL80 Medicago_truncatula Mtr-MIR2592bg,Mtr-MIRN1961b Mtr-chr7 + 40588880 40589172 Mtr-CL81 Medicago_truncatula Mtr-MIR160d,Mtr-MIR160h Mtr-chr7 - 40820936 40821041 Mtr-CL82 Medicago_truncatula Mtr-MIR1509a,Mtr-MIR1509e Mtr-chr7 + 46301235 46301366 Mtr-CL83 Medicago_truncatula Mtr-MIR164c,Mtr-MIR164g Mtr-chr7 - 46417700 46417800 Mtr-CL84 Medicago_truncatula Mtr-MIR167b,Mtr-MIR167c Mtr-chr7 + 47492506 47492722 Mtr-CL85 Medicago_truncatula Mtr-MIR164d,Mtr-MIR164j Mtr-chr8 + 7860942 7861028 Mtr-CL86 Medicago_truncatula Mtr-MIR166g,Mtr-MIR166l Mtr-chr8 - 9298712 9298831 Mtr-CL87 Medicago_truncatula Mtr-MIR159b,Mtr-MIR159c Mtr-chr8 - 10543007 10543201 Mtr-CL88 Medicago_truncatula Mtr-MIRN1924,Mtr-MIRN1971 Mtr-chr8 - 10772555 10773500 Mtr-CL89 Medicago_truncatula Mtr-MIRN1910,Mtr-MIRN1945 Mtr-chr8 + 13806174 13807669 Mtr-CL9 Medicago_truncatula Mtr-MIR399m,Mtr-MIR399n Mtr-chr1 + 45947848 45952630 Mtr-CL90 Medicago_truncatula Mtr-MIR2088a,Mtr-MIR2088b Mtr-chr8 - 26128613 26128727 Mtr-CL91 Medicago_truncatula Mtr-MIR399j,Mtr-MIR399t Mtr-chr8 + 35982393 35988437 Mtr-CL92 Medicago_truncatula Mtr-MIR399k,Mtr-MIR399l Mtr-chr8 + 35993038 35997921 Mtr-CL93 Medicago_truncatula Mtr-MIR399aa,Mtr-MIR399u,Mtr-MIR399v,Mtr-MIR399w,Mtr-MIR399x Mtr-chr8 - 36003471 36019924 Mtr-CL94 Medicago_truncatula Mtr-MIR1509c,Mtr-MIR1509d Mtr-chr8 - 38022341 38025364 Mtr-CL95 Medicago_truncatula Mtr-MIR166e,Mtr-MIR166j,Mtr-MIR166k Mtr-chr8 - 39663053 39663379 Mtr-CL96 Medicago_truncatula Mtr-MIR157d,Mtr-MIR157e Mtr-chr8 + 44922516 44922702 Mtr-CL97 Medicago_truncatula Mtr-MIR2597c,Mtr-MIR2597d Mtr-scaffold1086 - 1090 1198