SUMMARISING RUN PARAMETERS
==========================
Input filename: TGGAATTCTCGG
Trimming mode: single-end
Trim Galore version: 0.6.0
Cutadapt version: 1.18
Number of cores used for trimming: 1
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'TGGAATTCTCGG' (Illumina small RNA adapter; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length before a sequence gets removed: 18 bp
Maxiumum tolerated read length after trimming (for smallRNA trimming): 45 bp
Output file will be GZIP compressed


Traceback (most recent call last):
  File "/usr/bin/cutadapt", line 11, in <module>
    sys.exit(main())
  File "/usr/lib64/python2.7/site-packages/cutadapt/__main__.py", line 776, in main
    fileformat=options.format, interleaved=is_interleaved_input)
  File "/usr/lib64/python2.7/site-packages/cutadapt/pipeline.py", line 107, in set_input
    interleaved, mode='r')
  File "/usr/lib64/python2.7/site-packages/cutadapt/seqio.py", line 695, in open
    mode=mode, qualities=qualities)
  File "/usr/lib64/python2.7/site-packages/cutadapt/seqio.py", line 765, in _seqopen1
    first_line = file.readline()
AttributeError: 'str' object has no attribute 'readline'